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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGCAAGAGAAATGAACGTTCACCTACTCCGAAAAGTGTCTCACCCCGTGGTCGACCTGCTGATTCTCGAAGTCCATCTCCACATAATTCTGACGCTGATgtaagtcctaaaactatgtttgtggtgttctataatgaagcttgtaatcgtcgagtacactggttatgcttgttacttatttactttatatttttaattgtag

Basic information

species Vitis vinifera
transcript Vv18s0001g05550.t01
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110415106|gb|EC980980.1|EC980980
EST:     GTCGAACTGCTGATTCTCGAAGTCCATCTCCACATAATTCTGACGCTGAT                         GAATGATGGAGTAGCATATGGGGAAATCTTTGGTTTGATGTACCGTGTGTA
genomic: GTCGACCTGCTGATTCTCGAAGTCCATCTCCACATAATTCTGACGCTGATgtaagtccta ... ttaattgtagGAATGATGGAGTAGCATATGGAGAAATCTTTGGTTTGATGTACCGTGTGTA
EST: gi|351015878|gb|FQ431833.1|FQ431833
EST:     GTCGACCTGCTGATTCTCGAAGTCCATCTCCACATAATTCTGACGCTGAT                         GAATGATGGAGTA
genomic: GTCGACCTGCTGATTCTCGAAGTCCATCTCCACATAATTCTGACGCTGATgtaagtccta ... ttaattgtagGAATGATGGAGTA
EST: gi|110715132|gb|EE092829.1|EE092829
EST:     GTCGACCTGCTGATTCTCGAAGTCCATCTCCACATAATTCTGACGCTGAT                         GAATGATGGAGTAGCATATGGAGAAATCTTTGGTTTGATGTACCGTGTGTA
genomic: GTCGACCTGCTGATTCTCGAAGTCCATCTCCACATAATTCTGACGCTGATgtaagtccta ... ttaattgtagGAATGATGGAGTAGCATATGGAGAAATCTTTGGTTTGATGTACCGTGTGTA
EST: gi|110409912|gb|EC975586.1|EC975586
EST:     GTCGAACTGCTGATTCTCGAAGTCCATCTCCACATAATTCTGACGCTGAT                         GAATGATGGAGTAGCATATGGAGAAATCTTTGGTTTGATGTACCGTGTGTA
genomic: GTCGACCTGCTGATTCTCGAAGTCCATCTCCACATAATTCTGACGCTGATgtaagtccta ... ttaattgtagGAATGATGGAGTAGCATATGGAGAAATCTTTGGTTTGATGTACCGTGTGTA
EST: gi|18459646|gb|BM437924.1|BM437924
EST:     GTCGACCTGCTGATTCTCGAAGTCCATCTCCACATAATTCTGACGCTGAT                         GAATGATGGAGTAGCATATGGAGAAATCTTTGGTTTGATGTACCGTGTGTA
genomic: GTCGACCTGCTGATTCTCGAAGTCCATCTCCACATAATTCTGACGCTGATgtaagtccta ... ttaattgtagGAATGATGGAGTAGCATATGGAGAAATCTTTGGTTTGATGTACCGTGTGTA
EST: gi|110413030|gb|EC978799.1|EC978799
EST:     GTCGAACTGCTGATTCTCGAAGTCCATCTCCACATAATTCTGACGCTGAT                         GAATGATGGAGTAGCATATGGAGAAATCTTTGGTTTGATGTACCGTGTGTA
genomic: GTCGACCTGCTGATTCTCGAAGTCCATCTCCACATAATTCTGACGCTGATgtaagtccta ... ttaattgtagGAATGATGGAGTAGCATATGGAGAAATCTTTGGTTTGATGTACCGTGTGTA
EST: gi|22012306|gb|BQ797340.1|BQ797340
EST:     GTCGACCTGCTGATTCTCGAAGTCCATCTCCACATAATTCTGACGCTGAT                         GAATGATGGAGTAGCATATGGAGAAATCTTTGGTTTGATGTACCGTGTGTA
genomic: GTCGACCTGCTGATTCTCGAAGTCCATCTCCACATAATTCTGACGCTGATgtaagtccta ... ttaattgtagGAATGATGGAGTAGCATATGGAGAAATCTTTGGTTTGATGTACCGTGTGTA
EST: gi|37184355|gb|CF603709.1|CF603709
EST:     GTCGACCTGCTGATTCTCGAAGTCCATCTCCACATAATTCTGACGCTGAT                         GAATGATGGAGTAGCA
genomic: GTCGACCTGCTGATTCTCGAAGTCCATCTCCACATAATTCTGACGCTGATgtaagtccta ... ttaattgtagGAATGATGGAGTAGCA
EST: gi|110374026|gb|EC938504.1|EC938504
EST:     GTCGACCTGCTGATTCTCGAAGTCCATCTCCACATAATTCTGACGCTGAT                         GAATGATGGAGTAGCATATGGAGAAATCTTTGGTTTGATGTACCGTGTGTA
genomic: GTCGACCTGCTGATTCTCGAAGTCCATCTCCACATAATTCTGACGCTGATgtaagtccta ... ttaattgtagGAATGATGGAGTAGCATATGGAGAAATCTTTGGTTTGATGTACCGTGTGTA
EST: gi|349825188|gb|FQ415735.1|FQ415735
EST:     GTCGACCTGCTGATTCTCGAAGTCCATCTCCACATAATTCTGACGCTGAT                         GAATGATGGAGTAGCA
genomic: GTCGACCTGCTGATTCTCGAAGTCCATCTCCACATAATTCTGACGCTGATgtaagtccta ... ttaattgtagGAATGATGGAGTAGCA
EST: gi|30321299|gb|CD004561.1|CD004561
EST:     GTCGACCTGCTGATTCTCGAAGTCCATCTCCACATAATTCTGACGCTGAT                         GAATGATGGAGTAGCATATGGAGAAATCTTTGGTTTGATGTACCGTGTGTA
genomic: GTCGACCTGCTGATTCTCGAAGTCCATCTCCACATAATTCTGACGCTGATgtaagtccta ... ttaattgtagGAATGATGGAGTAGCATATGGAGAAATCTTTGGTTTGATGTACCGTGTGTA
EST: gi|110381112|gb|EC946429.1|EC946429
EST:     GTCGAACTGCTGATTCTCGAAGTCCATCTCCACATAATTCTGACGCTGAT                         GAATGATGGAGTAGCATATGGAGAAATCTTTGGTTTGATGTACCGTGTGTA
genomic: GTCGACCTGCTGATTCTCGAAGTCCATCTCCACATAATTCTGACGCTGATgtaagtccta ... ttaattgtagGAATGATGGAGTAGCATATGGAGAAATCTTTGGTTTGATGTACCGTGTGTA
EST: gi|110420260|gb|EC986526.1|EC986526
EST:     GTCGAACTGCTGATTCTCGAAGTCCATCTCCACATAATTCTGACGCTGAT                         GAATGATGGAGTAGCATATGGAGAAATCTTTGGTTTGATGTACCGTGTGTA
genomic: GTCGACCTGCTGATTCTCGAAGTCCATCTCCACATAATTCTGACGCTGATgtaagtccta ... ttaattgtagGAATGATGGAGTAGCATATGGAGAAATCTTTGGTTTGATGTACCGTGTGTA
EST: gi|22012365|gb|BQ797399.1|BQ797399
EST:     GTCGACCTGCTGATTCTCGAAGTCCATCTCCACATAATTCTGACGCTGAT                         GAATGATGGAGTAGCATATGGAGAAATCTTTGGTTTGATGTACCGTGTGTA
genomic: GTCGACCTGCTGATTCTCGAAGTCCATCTCCACATAATTCTGACGCTGATgtaagtccta ... ttaattgtagGAATGATGGAGTAGCATATGGAGAAATCTTTGGTTTGATGTACCGTGTGTA
EST: gi|110408451|gb|EC974087.1|EC974087
EST:     GTCGAACTGCTGATTCTCGAAGTCCATCTCCACATAATTCTGACGCTGAT                         GAATGATGGAGTAGCATATGGAGAAATCTTTGGTTTGATGTACCGTGTGTA
genomic: GTCGACCTGCTGATTCTCGAAGTCCATCTCCACATAATTCTGACGCTGATgtaagtccta ... ttaattgtagGAATGATGGAGTAGCATATGGAGAAATCTTTGGTTTGATGTACCGTGTGTA
EST: gi|110405318|gb|EC970858.1|EC970858
EST:     GTCGAACTGCTGATTCTCGAAGTCCATCTCCACATAATTCTGACGCTGAT                         GAATGATGGAGTAGCATATGGAGAAATCTTTGGTTTGATGTACCGTGTGTA
genomic: GTCGACCTGCTGATTCTCGAAGTCCATCTCCACATAATTCTGACGCTGATgtaagtccta ... ttaattgtagGAATGATGGAGTAGCATATGGAGAAATCTTTGGTTTGATGTACCGTGTGTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACGCAAGAGAAATGAACGTTCACCTACTCCGAAAAGTGTCTCACCCCGTGGTCGACCTGCTGATTCTCGAAGTCCATCTCCACATAATTCTGACGCTGATgtaagtcctaaaactatgtttgtggtgttctataatgaagcttgtaatcgtcgagtacactggttatgcttgttacttatttactttatatttttaattgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT