1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CTGTGATCACTATGGTACAATGCGCATACAGGGAAATCGTGAGTATTCATGTAAGCTGAAATTCAAGGAGCAGTCAATCATAGACCGGAATCCTCACCAGgtgcgctctctctctctgtctcatgtgcatgcatacacccgctctcccttgccttctctcatgcacacattcacagatttactgctaaaacacaaaaatt...
species | Vitis vinifera |
transcript | Vv18s0001g03790.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GTAAGCTGAAATTCAAGGAGCAGTCAATCATAGACCGGAATCCTCACCAG GTGCAAGGTATAGTTCAGGATAGGCATGGGAAAACAGTGGCAACACTATTTEST: gi|161717143|gb|FC068478.1|FC068478
genomic: GTAAGCTGAAATTCAAGGAGCAGTCAATCATAGACCGGAATCCTCACCAGgtgcgctctc ... tattttgcagGTGCAAGGTATAGTTCAGGATAGGCATGGGAAAACAGTGGCAACACTATTT
EST: GTAAGCTGAAATTCAAGGAGCAGTCAATCATAGACCGGAATCCTCACCAG GTGCAAGGTATAGTTCAGGATAGGCATGGGAAAACAGTGGCAACACTATTTEST: gi|110410950|gb|EC976646.1|EC976646
genomic: GTAAGCTGAAATTCAAGGAGCAGTCAATCATAGACCGGAATCCTCACCAGgtgcgctctc ... tattttgcagGTGCAAGGTATAGTTCAGGATAGGCATGGGAAAACAGTGGCAACACTATTT
EST: GTAAGCTGAAATTCAAGGAGCAGTCAATCATAGACCGGAATCCTCACCAG GTGCAAGGTATAGTTCAGGATAGGCATGGGAAAACAGTGGCAACACTATTTEST: gi|161719223|gb|FC065737.1|FC065737
genomic: GTAAGCTGAAATTCAAGGAGCAGTCAATCATAGACCGGAATCCTCACCAGgtgcgctctc ... tattttgcagGTGCAAGGTATAGTTCAGGATAGGCATGGGAAAACAGTGGCAACACTATTT
EST: GTAAGCTGAAATTCAAGGAGCAGTCAATCATAGACCGGAATCCTCACCAG GTGCAAGGTATAGTTCAGGATAGGCATGGGAAAACAGTGGCAACACTATTT
genomic: GTAAGCTGAAATTCAAGGAGCAGTCAATCATAGACCGGAATCCTCACCAGgtgcgctctc ... tattttgcagGTGCAAGGTATAGTTCAGGATAGGCATGGGAAAACAGTGGCAACACTATTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGTGATCACTATGGTACAATGCGCATACAGGGAAATCGTGAGTATTCATGTAAGCTGAAATTCAAGGAGCAGTCAATCATAGACCGGAATCCTCACCAGgtgcgctctctctctctgtctcatgtgcatgcatacacccgctctcccttgccttctctcatgcacacattcacagatttactgctaaaacacaaaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaaaaa