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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTTAGGAAGCCTTACAACCTTCAGTGGCTGGAATCAGAAAATGCTTGATCTCAGTGTTGATGGCCAGTGGGTTTTTTCTGTGCTTGGCTTTCTCATAGgtaacttgtcattttgtaaaaatcatgttatagtagaggcattgacaagctggaaccatggctagtaatgaaaatttcaaggttcaactatatcagctggtccccttattcaaatttggcaacaaacactcagcagtataggcgaatccacttgctgtaagatgagtttttgaccttctggttctttacag

Basic information

species Vitis vinifera
transcript Vv18s0001g03520.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g03520.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os10g41749.2 (Oryza sativa), 5'ss of exon 5
TACTTAGGAAGCCTTACAACCTTCAGTGGCTGGAATCAGAAAATGCTTGATCTCAGTGTTGATGGCCAGTGGGTTTTTTCTGTGCTTGGCTTTCTCATAGgtaacttgtc---attttgtaaaaatcatgttatagtagaggcattgacaagctggaaccatggctagtaatgaaaatttcaaggttcaactatatcagctggtccccttattcaaatttggcaacaaacactcagcagtataggcgaatccacttgctgtaagatgagtttttgaccttctggttctttacag
||| | ||||||||||| ||||||||||| ||||| ||||||||| |||  ||   |    | ||||| ||||| | | ||||   |||| |  |  ||||||  |  ||   ||||| ||  |||  |||||| ||     | |  || |  |   | |    | |  || |||||    ||| ||  | | |    ||| |   |  | ||  || ||  | |                                                                     
TACATGGGAAGCCTTACCACCTTCAGTGGGTGGAACCAGAAAATGGTTGGCCTATCTTCCAAAGGCCACTGGGTATATGCTGTAGCTGGCATAGTACTAGgtacatcatcttcattttctatgaat--tgttattgtc----cctaaactaattattatc----caacaaaagaaaaaagaaagatttcattttgatggctcgcaacactctt--aacttacccag--------------------------------------------------------------------

upper sequence: Vv18s0001g03520.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G116327_T05 (Zea mays), 5'ss of exon 6
TACTTAGGAAGCCTTACAACCTTCAGTGGCTGGAATCAGAAAATGCTTGATCTCAGTGTTGATGGCCAGTGGGTTTTTTCTGTGCTTGGCTTTCTCATAGgtaacttgtcattttgtaaaaatcatgttatagtagaggcattgacaagctggaaccatggctagtaatgaaaatttcaaggttcaactatatcagctggtccccttattcaaatttggcaacaaacactcagcagtataggcgaatccacttgctgtaagatgagtttttgaccttctggttctttacag
||| | ||||||||||||||||||||||| ||||| ||||||||| ||| | |   |    | ||||| ||||| | | || |    ||| |  |  |||||| ||  ||||  | |     | ||| |  |||  |     |   ||  | ||   ||    |   |  |||  |  |      ||   |       | |  |   | | |  ||  |                                                                        
TACATGGGAAGCCTTACAACCTTCAGTGGGTGGAACCAGAAAATGGTTGGTTTGTCTTCCAAAGGCCATTGGGTATATGCTATAGCGGGCGTAGTACTAGgtatctgatcatcattt-----ttatgattaagtgcaatatctcctaaattaga--tattatcaaacaaaaaatatgaacaaaataatccttctgatggctaacaacactgattttcag------------------------------------------------------------------------

upper sequence: Vv18s0001g03520.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA06G11580.1 (Glycine max), 5'ss of exon 5
TACTTAGGAAGCCTTACAACCTTCAGTGGCTGGAATCAGAAAATGCTTGATCTCAGTGTTGATGGCCAGTGGGTTTTTTCTGTGCTTGGCTTTCTCATAGgtaacttgtcattttgtaaaaatcatgttatagtagaggcattgacaagctggaaccatggctagtaatgaaaatttcaaggttcaactatatcagctggtccccttattcaaatttggcaacaaacactcagcagtataggcgaatccacttgctgtaagatgagttt---ttgaccttctggttctttacag
|||||||| ||||| |||||||||||||| |||||||| |||||||| || |||||||||   || || ||| | ||  ||   |||||||||||  ||||||| | |     ||  |       || | || ||  ||| ||  | ||    || |        | ||| |||   |    || |  | | |    |  |   |  |   | ||  |   |     |     |   |||   |  || |||     |||||||| |||   ||    ||    ||||| |   
TACTTAGGGAGCCTCACAACCTTCAGTGGTTGGAATCAAAAAATGCTAGAACTCAGTGTTTCCGGGCATTGGCTCTTCGCTTCACTTGGCTTTCTAGTAGgtaaataggaggattaga-------tgatttaataagggcgttttctagtcataagctcattgtttcatgcaaagaacttt-ttaatttttgtttcatatttatcccaagtagatgagttgatgcttatatttcctcataaaaggctcaactga---taagatgaatttgttttacaattacaattcttcag--

upper sequence: Vv18s0001g03520.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA04G43110.1 (Glycine max), 5'ss of exon 5
TACTTAGGAAGCCTTACAACCTTCAGTGGCTGGAATCAGAAAATGCTTGATCTCAGTGTTGATGGCCAGTGGGTTTTTTCTGTGCTTGGCTTTCTCATAGgtaacttgtcattttgtaaaaatcatgttatagtagaggcattgacaagctggaa--ccatggctagtaatgaaaatttcaaggttcaactatatcagctggtccccttattcaaatttggcaacaaacactcagcagtataggcgaatccacttgctgtaagatgagtt---tttgaccttctggttctttacag
||||| |||||||| ||||||||||| || |||||||| |||||||| || |||||||||   || || ||| | ||  |||  |||||||||||  ||||||| |       ||  |  | |       || ||  ||| |   | || |  ||   ||| | |       || | ||     ||    | | |    |  |   |  |   | ||  |   |    |  | |       ||       || |||   |||||||| ||   |||    ||    || || |   
TACTTGGGAAGCCTCACAACCTTCAGCGGTTGGAATCAAAAAATGCTAGAACTCAGTGTTTCCGGGCATTGGCTCTTCGCTGCACTTGGCTTTCTAGTAGgtaaatacgaggattagaggatt-------taataagggcgtcttctagttttaagctcattgtttcatgcaaagaatttttttttttgttttgttca-tatttatcccaagaagatgagttgatg--cttttatttcctcagaaaggctcaattg--ataagatgaattcattttacaattacaatttttcag--

upper sequence: Vv18s0001g03520.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA06G11570.1 (Glycine max), 5'ss of exon 6
-------------------------------------------------------TACTTAGGAAGCCTTACAACCTTCAGTGGCTGGAATCAGAAAATGCTTGATCTCAGT----GTTGATGGCCAGTGGGTTTTTTCTGTGCTTGGCTTTCTCATAGgtaacttgtcattttgtaaaaatcatgttatagtagaggcattgacaagctggaaccatggctagtaatgaaaatttcaaggttcaactatatcagctggtccccttattcaaatttggcaacaaacactcagcagtataggcgaatccacttgctgtaagatgagtttttgaccttctggttctttacag
                                                       |||||||| ||||| ||||| |||||||| ||||||||||||||| |||| |||| |    | |  | | || ||| | || | |||||| |||||| | ||||||||  ||  |  || ||| |    || | |||                                                                                                                                                              
TAAAGCAGACATATCCCGTGTATCTGAGCATCTAGCCATTGGACTAACAACTGGATACTTAGGGAGCCTAACAACGTTCAGTGGTTGGAATCAGAAAATGgttgaactcattaattgctactagacaatggctcttgtttgtgctcggctttttaataggtaatatggtacattttaatag--gtgatttag--------------------------------------------------------------------------------------------------------------------------------------------------------------

upper sequence: Vv18s0001g03520.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT2G41705.2 (Arabidopsis thaliana), 5'ss of exon 5
TACTTAGGAAGCCTTACAACCTTCAGTGGCTGGAATCAGAAAATGCTTGATCTCAGTGTTGATGGCCAGTGGGTTTTTTCTGTGCTTGGCTTTCTCATAGgtaacttgtcattttgtaaaaatcatgttatagtagaggcattgacaagctggaaccatggctagtaatgaaaatttcaaggttcaactatatcagctggtccccttattcaaatttggcaacaaacactcagcagtataggcgaatccacttgctgtaagatgagtttttgaccttctggttctttacag
|| || || || || ||||| ||||| || ||||| ||||||||||| ||||| |||| |||||| || ||||| | | |||||||||||||| |  |||||||      |      ||    | | | |   |  |  ||   || |  | | |  |    || |     | |    ||    | ||| || |||                                                                                               
TATTTGGGGAGTCTGACAACATTCAGCGGTTGGAACCAGAAAATGCTGGATCTTAGTGCTGATGGTCAATGGGTGTATGCTGTGCTTGGCTTTTTATTAGgtaaa-----aacaaaaaattcccttctcaatctccaatcacctactaaattggatgaaacatacttgcttacagcataaa---cgacttta-cag-----------------------------------------------------------------------------------------------