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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAATTATTCATGCTGAAGGCCCCTCAGGTCCTAACAGAGAATATCTTTTCCAACTTGAACAAGCACTCCTTCAAATGGgtaaggtttctctgaggattaccattttctgtctctctttatttatatcttaagaagatttattttcttcaatattttgcatag

Basic information

species Vitis vinifera
transcript Vv18s0001g03150.t01
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27579621|gb|CB002316.1|CB002316
EST:     TCCTAACAGAGAATATCTTTTCCAACTTGAACAAGCACTCCTTCAAATGG                         GATGTGAAGACAAACATGTAATGGATCTCGCGAATGAAGTGAGGCGCATCC
genomic: TCCTAACAGAGAATATCTTTTCCAACTTGAACAAGCACTCCTTCAAATGGgtaaggtttc ... ttttgcatagGATGTGAAGACAAACATGTAATGGATCTCGCGAATGAAGTGAGGCGCATCC
EST: gi|110371933|gb|EC936069.1|EC936069
EST:     TCCTAACAGAGAATATCTTTTCCAACTTGAACAAGCACTCCTTCAAATGG                         GATGTGAAGACAAACATGTAATGGATCTCGCGAATGAAGTGAGGCGCATCC
genomic: TCCTAACAGAGAATATCTTTTCCAACTTGAACAAGCACTCCTTCAAATGGgtaaggtttc ... ttttgcatagGATGTGAAGACAAACATGTAATGGATCTCGCGAATGAAGTGAGGCGCATCC
EST: gi|71873170|gb|DT022225.1|DT022225
EST:     TCCTAACAGAGAATATCTTTTCCAACTTGAACAAGCACTCCTTCAAATGG                         GATGTGAAGACAAACATGTAATGGATCTCGCGAATGAAGTGAGGCGCATCC
genomic: TCCTAACAGAGAATATCTTTTCCAACTTGAACAAGCACTCCTTCAAATGGgtaaggtttc ... ttttgcatagGATGTGAAGACAAACATGTAATGGATCTCGCGAATGAAGTGAGGCGCATCC
EST: gi|110709129|gb|EE084317.1|EE084317
EST:     TCCTAACAGAGAATATCTTTTCCAACTCGAACAAGCACTCCTTCAAATGG                         GATGTGAAGACAAACATGTAATGGATCTCGCGAATGAAGTGAGGCGCATCC
genomic: TCCTAACAGAGAATATCTTTTCCAACTTGAACAAGCACTCCTTCAAATGGgtaaggtttc ... ttttgcatagGATGTGAAGACAAACATGTAATGGATCTCGCGAATGAAGTGAGGCGCATCC
EST: gi|110382676|gb|EC946993.1|EC946993
EST:     TCCTAACAGAGAATATCTTTTCCAACTTGAACAAGCACTCCTTCAAATGG                         GATGTGAAGACAAACATGTAATGGATCTCGCGAATGAAGTGAGGCGCATCC
genomic: TCCTAACAGAGAATATCTTTTCCAACTTGAACAAGCACTCCTTCAAATGGgtaaggtttc ... ttttgcatagGATGTGAAGACAAACATGTAATGGATCTCGCGAATGAAGTGAGGCGCATCC
EST: gi|46910084|gb|CN545459.1|CN545459
EST:     TCCTAACAGAGAATATCTTTTCCAACTTGAACAAGCACTCCTTCAAATGG                         GATGTGAAGACAAACATGTAATGGATCTCGCGAATGAAGTGAGGCGCATCC
genomic: TCCTAACAGAGAATATCTTTTCCAACTTGAACAAGCACTCCTTCAAATGGgtaaggtttc ... ttttgcatagGATGTGAAGACAAACATGTAATGGATCTCGCGAATGAAGTGAGGCGCATCC
EST: gi|27580878|gb|CB003573.1|CB003573
EST:     TCCTAACAGAGAATATCTTTTCCAACTTGAACAAGCACTCCTTCAAATGG                         GATGTGAAGACAAACATGTAATGGATCTCGCGAATGAAGTGAGGCGCATCC
genomic: TCCTAACAGAGAATATCTTTTCCAACTTGAACAAGCACTCCTTCAAATGGgtaaggtttc ... ttttgcatagGATGTGAAGACAAACATGTAATGGATCTCGCGAATGAAGTGAGGCGCATCC
EST: gi|83275290|gb|DV938441.1|DV938441
EST:     TCCTAACAGAGAATATCTTTTCCAACTTGAACAAGCACTCCTTCAAATGG                         GATGTGAAGACAAACATGTAATGGATCTCGCGAATGAAGTGAGGCGCATCC
genomic: TCCTAACAGAGAATATCTTTTCCAACTTGAACAAGCACTCCTTCAAATGGgtaaggtttc ... ttttgcatagGATGTGAAGACAAACATGTAATGGATCTCGCGAATGAAGTGAGGCGCATCC
EST: gi|30321569|gb|CD004831.1|CD004831
EST:     TCCTAACAGAGAATATCTTTTCCAACTTGAACAAGCACTCCTTCAAATGG                         GATGTGAAGACAAACATGTAATGGATCTCGCGAATGAAGTGAGGCGCATCC
genomic: TCCTAACAGAGAATATCTTTTCCAACTTGAACAAGCACTCCTTCAAATGGgtaaggtttc ... ttttgcatagGATGTGAAGACAAACATGTAATGGATCTCGCGAATGAAGTGAGGCGCATCC
EST: gi|27580470|gb|CB003165.1|CB003165
EST:     TCCTAACAGAGAATATCTTTTCCAACTTGAACAAGCACTCCTTCAAATGG                         GATGTGAAGACAAACATGTAATGGATCTCGCGAATGAAGTGAGGCGCATCC
genomic: TCCTAACAGAGAATATCTTTTCCAACTTGAACAAGCACTCCTTCAAATGGgtaaggtttc ... ttttgcatagGATGTGAAGACAAACATGTAATGGATCTCGCGAATGAAGTGAGGCGCATCC
EST: gi|27581639|gb|CB004334.1|CB004334
EST:     TCCTAACAGAGAATATCTTTTCCAACTTGAACAAGCACTCCTTCAAATGG                         GATGTGAAGACAAACATGTAATGGATCTCGCGAATGAAGTGAGGCGCATCC
genomic: TCCTAACAGAGAATATCTTTTCCAACTTGAACAAGCACTCCTTCAAATGGgtaaggtttc ... ttttgcatagGATGTGAAGACAAACATGTAATGGATCTCGCGAATGAAGTGAGGCGCATCC