Sequence
atgc intronic sequence ATGC exonic sequenceAAAAAGAGGAACAAAGGGGGATGCCTCTGCTCTGGTACCAACAGTGATGACGGCTGTCCCAGCCATTCTTGATCGTGTTCGAGATGGTGTGCGCAAGAAGgtttgtgaattttggcatgcataagaatatacatatgcatacatattcatatctgcaagcatgcatagttattattattatatattttggtgtgtatttgagaatgttgaatttgatgtctgatacaaggtgattacataaataatgaattttgttaacacttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g02810.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os12g07110.2 (Oryza sativa), 5'ss of exon 5
AAAAAGAGGAACAAAGGGGGATGCCTCTGCTCTGGTACCAACAGTGATGACGGCTGTCCCAGCCATTCTTGATCGTGTTCGAGATGGTGTGCGCAAGAAGgtttgtgaattttggcatgcataagaatatacatatgcatacatattcatatctgcaagcatgcatagttattattattatatattttggtgtgtatttgagaatgttgaatttgatgtctgatacaaggtgattacataaataatgaattttgttaacacttcag
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AAAAAAGGGAACACTGGGTGATGCTTCTGCACTCAAGCCAACACTGATGACCGCTGTACCTGCTATACTTGATCGTGTTCGTGATGGTGTGAGAAAGAAGgtac-tgcactttaagctgttt-----cgtcca-atgt-----tcttcatctctttcttaatttactg--attgttatttttcatattgggatggctttag-----------------------------------------------------------------
upper sequence: Vv18s0001g02810.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA06G11860.1 (Glycine max), 5'ss of exon 5
AAAAAGAGGAACAAAGGGGGATGCCTCTGCTCTGGTACCAACAGTGATGACGGCTGTCCCAGCCATTCTTGATCGTGTTCGAGATGGTGTGCGCAAGAAGgtttgtgaattttggcatgcataagaatatacatatgcatacatattcatatctgcaagcatgcatagttattattattatatattttggtgtgtatttgagaatgttgaatttgatgtctgatacaaggtgattacataaataatgaattttgttaacacttcag
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AAAAAAGGGGAAACAGGGGGATTCCACTGCACTGATGCCAACTGTGATGGCAGCTGTACCAGCAATTCTTGATCGTGTACGTGACGGAGTGCTCAAGAAGgtatttgatttgtg--atgcaattgaaga-atacactcctacatatcaatatt---atgcgttgat-gtctctat-gttagtgagcttggtgaata------aaccttgtagttg----taggtatacagtcaacgtagtaagactaaaccctgatcgtgcag---
upper sequence: Vv18s0001g02810.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT1G77590.1 (Arabidopsis thaliana), 5'ss of exon 6
AAAAAGAGGAACAAAGGGGGATGCCTCTGCTCTGGTACCAACAGTGATGACGGCTGTCCCAGCCATTCTTGATCGTGTTCGAGATGGTGTGCGCAAGAAGgtttgtgaattttgg-catgcataagaa---tatacatatgcatacatattcatatctgc-aagcatgcatagttattattatt-atatattttggtgtgtatttgagaa---------tgttgaatt------------tgatgtctgatacaaggtgattacataaataatgaattttgttaacacttcag
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AAAAAAGGGTACAAAAGGAGATGTCACAGCACTAAAGCCCACTATAATGACAGCTGTTCCAGCCATTCTTGATCGTGTCAGGGATGGTGTCCGCAAAAAGgtttgtgcatgttagatacacatcgaaattctttggttggctatcctctgttaaagcagttgagctcgtgctctcctagctgtttaaataattccggctatctcccagcaaccaagatgtgctaaattgtcttcattctcttgtgagtaaaacattataattgcataagcactgacaatttatgac-catcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161716236|gb|FC065864.1|FC065864EST: GGCTGTCCCAGCCATTCTTGATCGTGTTCGAGATGGTGTGCGCAAGAAG GTAGATGCAAAGGGTGGTCTAGCCAAGAAATTGTTTGATTTAGCATATGCA
genomic: GGCTGTCCCAGCCATTCTTGATCGTGTTCGAGATGGTGTGCGCAAGAAGgtttgtgaat ... aacacttcagGTAGATGCAAAGGGTGGTCTAGCCAAGAAATTGTTTGATTTAGCATATGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAAAAGAGGAACAAAGGGGGATGCCTCTGCTCTGGTACCAACAGTGATGACGGCTGTCCCAGCCATTCTTGATCGTGTTCGAGATGGTGTGCGCAAGAAGgtttgtgaattttggcatgcataagaatatacatatgcatacatattcatatctgcaagcatgcatagttattattattatatattttggtgtgtatttgagaatgttgaatttgatgtctgatacaaggtgattacataaataatgaattttgttaacacttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG