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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGAATTGTGATGGCAGCTGCTGCAAAGCACCTTACACCTGTAGCTTTGGAGCTTGGGGGGAAATGTCCAGTTGTCGTTGATTCAGACATTAATTTACCTgtaaagaacctttcttagtcttgcatacttatggtgctatggtcatttaaccctgttgctacctgtggcataatgggctacccttttgcctctgtatggcttatgtgctgacatagtttttttgtgtttccaag

Basic information

species Vitis vinifera
transcript Vv18s0001g02440.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g02440.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os11g08300.1 (Oryza sativa), 5'ss of exon 5
ACGAATTGTGATGGCAGCTGCTGCAAAGCACCTTACACCTGTAGCTTTGGAGCTTGGGGGGAAATGTCCAGTTGTCGTTGATTCAGACATTAATTTACCTgtaaagaacctttcttagtcttgcatacttatggtgctatggtcatttaaccctgttgctacctgtggcataatgggctacccttttgcctctgtatggcttatgtgctgacatagtttttttgtgtttccaag
 || || ||||||||||| ||||||||||| ||||| ||||| ||| | |||||||| || ||||| || |   | ||||||||  | | | || | | |||||| | |   || |   ||  ||    | | |   ||    ||| ||       |  |   | |  ||  ||   ||| | |||| | |||  |||                                    
CCGCATAGTGATGGCAGCAGCTGCAAAGCATCTTACCCCTGTGGCTCTAGAGCTTGGTGGAAAATGCCCTGCAATTGTTGATTCTAATACTGATCTTCATgtaaacatctgctcctgaactgtcaagtctttaga--tagttacatatagaaacactcttgtttct--caagatctcctaacatttttcttctccatgtag---------------------------------

upper sequence: Vv18s0001g02440.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G060800_T02 (Zea mays), 5'ss of exon 4
ACGAATTGTGATGGCAGCTGCTGCAAAGCACCTTACACCTGTAGCTTTGGAGCTTGGGGGGAAATGTCCAGTTGTCGTTGATTCAGACATTAATTTACCTgtaaagaacctttcttagtcttgcatacttatggtgctatggtcatttaaccctgttgctacctgtggcataatgggctacccttttgcctctgtatggcttatgtgctgacatagtttttttgtgtttccaag
||| || ||||||||||| || |||||||| || || || |||||| |||||||||| |||||||  || ||| |||| |||||| |  || || | | ||||||      |   |   ||  |||  |  |     ||  || |      ||  ||  ||  | |  || ||  ||        ||||                                             
ACGTATAGTGATGGCAGCAGCCGCAAAGCATCTGACCCCGGTAGCTCTGGAGCTTGGTGGGAAATCCCCTGTTATCGTGGATTCAAATGTTGATCTCCATgtaaatgcatctctatgaactatcatgttcttaaa--taaagtta------ccattttttagttattacaaaaccggtattttcattgcag-------------------------------------------

upper sequence: Vv18s0001g02440.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA14G24140.1 (Glycine max), 5'ss of exon 5
ACGAATTGTGATGGCAGCTGCTGCAAAGCACCTTACACCTGTAGCTTTGGAGCTTGGGGGGAAATGTCCAGTTGTCGTTGATTCAGACATTAATTTACCTgtaaagaacctttcttagtcttgcatacttatggtgctatggtcatt--taaccctgttgctacctgtggcataatgggctacccttttgcctctgtatggcttatgtgctgacatagtttttttgtgtttccaag
||| ||||||||||| |||||| |||| ||||||||||| || |   |||||||||| || |||| ||||||||| ||||||||| | || ||||||   ||| |   ||||| |    |||  ||  ||||       | | |||   | |||   |||| | ||      | |      |    ||||  | || || |   |                               
ACGCATTGTGATGGCTGCTGCTTCAAAACACCTTACACCAGTTGTGCTGGAGCTTGGAGGAAAATCTCCAGTTGTTGTTGATTCAAATATCAATTTAAAGgtata---cctttgtcccactt-tatttttatcaattacttgccatcactgacctctttgc-atctcacttttgaccttaaattaatttgaatttgaattggcaag------------------------------

upper sequence: Vv18s0001g02440.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA02G26390.1 (Glycine max), 5'ss of exon 5
ACGAATTGTGATGGCAGCTGCTGCAAAGCACCTTACACCTGTAGCTTTGGAGCTTGGGGGGAAATGTCCAGTTGTCGTTGATTCAGACATTAATTTACCTgtaaagaacctttcttagtcttgcatacttatggtgctatg-gtcatttaaccctgttgctacctgtggcataatgggctacccttttgcctctgtatggcttatgtgctgacatagtttttttgtgtttccaag
||| ||||||||||| |||||| |||| ||||| ||||| || |   |||||||||| || |||| ||||||||| ||||||||| | || ||||||   ||| |   | ||     || ||   | | |    | || |   ||| | | | ||  ||| | ||      |||      |    ||||  | || || |   |                               
ACGCATTGTGATGGCTGCTGCTTCAAAACACCTAACACCAGTTGTGCTGGAGCTTGGAGGAAAATCTCCAGTTGTTGTTGATTCAAATATCAATTTAAAGgtatac--ctttgtcctgttttattttcatcaattactttccatcactgatctct--tgcaatctcacttttaagattaaattagtttgaatttgaattggcaag------------------------------

upper sequence: Vv18s0001g02440.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA06G12010.1 (Glycine max), 5'ss of exon 5
ACGAATTGTGATGGCAGCTGCTGCAAAGCACCTTACACCTGTAGCTTTGGAGCTTGGGGGGAAATGTCCAGTTGTCGTTGATTCAGACATTAATTTACCTgtaaag--aacctttcttagtcttgcatacttatggtgctatggtcatttaaccctgttgctacctgtggcataatgggctacccttttgcctctgtatggcttatgtgctgacatagtttttttgtgtttccaag
| |||| |||||| | ||||||||||| ||||||||||| || |   |||||||||| || |||| ||| ||||| ||||||||  |  |  |||| |  |||  |   |    |||| || || ||   |||      | |  | | || |  || || | |  |      | |      |    ||||  |    |                                      
AAGAATAGTGATGACTGCTGCTGCAAAACACCTTACACCAGTTGTGCTGGAGCTTGGAGGAAAATCTCCTGTTGTTGTTGATTCCAATGTCGATTTGCAGgtattgcctaagcctcttggtttttcaa--ttac----tttttattactttattctctttcaatttcatattttacttaaaattaatttgtattcacag-------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110361747|gb|EC925243.1|EC925243
EST:     GACATTAATTTACCC                         GTTGCAATTAGGCGGATAGCAGGGGGCAAGTGGGCAAGCAATAATGGACAA
genomic: GACATTAATTTACCTgtaaagaacc ... tgtttccaagGTTGCAATTAGGCGGATAGCAGGGGGCAAGTGGGCAAGCAATAATGGACAA
EST: gi|110387056|gb|EC951696.1|EC951696
EST:     AGCTTGGGGGGAAATGTCCAGTTGTCGTTGATTCAGACATTAATTTACCC                         GTTGNCA-TTAGGCGGATAGCAGGGGGCAAGTGGGCAAGCAATAATGGACA
genomic: AGCTTGGGGGGAAATGTCCAGTTGTCGTTGATTCAGACATTAATTTACCTgtaaagaacc ... tgtttccaagGTTG-CAATTAGGCGGATAGCAGGGGGCAAGTGGGCAAGCAATAATGGACA
EST: gi|33405976|gb|CF211603.1|CF211603
EST:     AGCTTGGGGGGAAATGTCCAGTTGTCGTTGATTCAGACATTAATTTACCC                         GTTGCAATTAGGCGGATAGCAGGGGGCAAGTGGGCAAGCAATAATGGACAA
genomic: AGCTTGGGGGGAAATGTCCAGTTGTCGTTGATTCAGACATTAATTTACCTgtaaagaacc ... tgtttccaagGTTGCAATTAGGCGGATAGCAGGGGGCAAGTGGGCAAGCAATAATGGACAA
EST: gi|33406064|gb|CF211691.1|CF211691
EST:     AGCTTGGGGGGAAATGTCCAGTTGTCGTTGATTCAGACATTAATTTACCC                         GTTGCAATTAGGCGGATAGCAGGGGGCAAGTGGGCAAGCAATAATGGACAA
genomic: AGCTTGGGGGGAAATGTCCAGTTGTCGTTGATTCAGACATTAATTTACCTgtaaagaacc ... tgtttccaagGTTGCAATTAGGCGGATAGCAGGGGGCAAGTGGGCAAGCAATAATGGACAA