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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTCTGATTTTGGACTAGCTAAATGGGCCTCAACTTCCTCATCACATATAACCTGCTCTGATGTTGCTGGCACCTTCGGgtttgtgcttcttctctagtagctataacttctatgtcccacattcttgtcatttttcagaagatcaataaaccccactattttgaattatggctttaaaatcttgagtaaaaaagttattacttgtcattgagaaagttcagaacatttattttctctgcag

Basic information

species Vitis vinifera
transcript Vv18s0001g01680.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g01680.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA04G42390.1 (Glycine max), 5'ss of exon 8
CTCTCTGATTTTGGACTAGCTAAATGGGCCTCAACTTCCTCATCACATATAACCTGCTCTGATGTTGCTGGCACCTTCGGgtttgtgcttct---tctctagtagctataacttctatgtcccacattcttgtcatttttcagaagatcaataaaccccactattttgaattatggctttaaaatcttgagtaaaaaagttattacttgtcattgagaaagttcagaacatttattttctctgcag
|||| |||||||||||| || |||||||| |||||||  |||||||||||||||||| | ||||||||||| |||||||||||||| ||| |    |     ||  |||| | |||   |    | | | ||      |    |||   | || |       |||| |||  ||||   |||| | |  | || |    ||  | |                                        
CTCTGTGATTTTGGACTGGCAAAATGGGCATCAACTTTGTCATCACATATAACCTGCACAGATGTTGCTGGAACCTTCGGgtttgtacttttaaaccctgcataattataccatctcccttatgcgtacatgctgcactgagaaagtgtattaga-------atttagaa--atggtcctaaattatgtattacattcatttatgcag--------------------------------------

upper sequence: Vv18s0001g01680.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA06G12410.1 (Glycine max), 5'ss of exon 8
CTCTCTGATTTTGGACTAGCTAAATGGGCCTCAACTTCCTCATCACATATAACCTGCTCTGATGTTGCTGGCACCTTCGGgtttgtgcttct---tctctagtagctataacttctatgtcccacattcttgtcatttttcagaagatcaataaaccccactattttgaattatggctttaaaatcttgagtaaaaaagttattacttgtcattgagaaagttcagaacatttattttctctgcag
||||||||||||||||| || |||||||| ||||| |  |||||||||||||| ||| | ||||||||||| ||||| |||||||| ||| |    |     || ||||| | ||    |   |  | | ||        |   |||     |      |   |  | |||||||   ||| | || |   |  |                                                   
CTCTCTGATTTTGGACTGGCAAAATGGGCATCAACCTTGTCATCACATATAACATGCACAGATGTTGCTGGAACCTTTGGgtttgtacttttaaaccctgcataactataccatcccctttataagtacatgctgc----cgagagaggtgcatttgaaatggtcctaaattatg-tattacactcatttatgcag--------------------------------------------------

upper sequence: Vv18s0001g01680.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA13G09620.1 (Glycine max), 5'ss of exon 9
CTCTCTGATTTTGGACTAGCTAAATGGGCCTCAACTTCCTCATCACATATAACCTGCTCTGATGTTGCTGGCACCTTCGGgtttgtgcttc---ttctctagtagct-ataacttctatgtcccacattcttgtcatttttcagaagatcaataaaccccactattttgaattatggctttaaaatcttgagtaaaaaagttattacttgtcattgagaaagttcagaacatttattttctctgcag
|||||||| |||||||| ||||||||||| ||||| || |||||||||||||  ||| | ||||||||||| ||||| |||||||| |||    |||||   || || || | |  ||  | |  |       |    ||| | |   |   |||   | |  |   | | || ||                                                                       
CTCTCTGACTTTGGACTTGCTAAATGGGCATCAACCTCATCATCACATATAATTTGCACAGATGTTGCTGGAACCTTTGGgtttgtacttacaattctcacataactgatcattcatacatgcagctgaggaattgcattttaaatagttc-taatttctaacacactaatttttgcag--------------------------------------------------------------------

upper sequence: Vv18s0001g01680.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA14G24660.1 (Glycine max), 5'ss of exon 9
CTCTCTGATTTTGGACTAGCTAAATGGGCCTCAACTTCCTCATCACATATAACCTGCTCTGATGTTGCTGGCACCTTCGGgtttgtgcttc---ttctc-tagtagctataacttctatgtcccacattcttgtcat-ttttcagaagatcaataaaccccactattttgaattatggctttaaaatcttgagtaaaaaagttattacttgtcattgagaaagttcagaacatttattttctctgcag
|||||||| |||||||| ||||||||||| || ||  | ||||||||||||| |||| | ||||||||||| ||||| |||||||| |||    ||||| || ||   |  | |  ||  | |  | | |      |   || | |  | |  |||   | |  |   | | || ||                                                                       
CTCTCTGACTTTGGACTTGCTAAATGGGCGTCGACCACTTCATCACATATAATCTGCACCGATGTTGCTGGAACCTTTGGgtttgtactttcaattctcatattactgaacattcatacatgctgcgtacagaaattgcatttaaagtagctctaatttctaacacacttatttttgcag--------------------------------------------------------------------