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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGTGAAGGACGAAGTGATTGTTGACCTTGTTGACCAGTGCCGCAATTACCAAAAGCGTGTCATGCTTCTTGTGAATGATACTGTgtacgattttactcttttttttctttctttctttttttttcttttccctttgcagtctttctttattttgaacttgaattgatgatactgataaggtggttgcttttctttag

Basic information

species Vitis vinifera
transcript Vv18s0001g01180.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g01180.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA04G42250.1 (Glycine max), 5'ss of exon 8
AGTGTGAAGGACGAAGTGATTGTTGACCTTGTTGACCAGTGCCGCAATTACCAAAAGCGTGTCATGCTTCTTGTGAATGATACTGTgtacgattttactcttttttttctttctttctttttttttcttttccctttgcagtctttctttattttgaacttgaattgatgatactgataaggtggttgcttttctttag
 |||||||||| |||||||||||||| |||||||||||||||||    |||||||||||||||||||||||||||||  |||||  ||| | ||||  |  | || || |   |  |   | | ||  |     |    ||  |  || || |    |||| | ||   |                             
GGTGTGAAGGAGGAAGTGATTGTTGATCTTGTTGACCAGTGCCGTTCATACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTACgtaagtttttgtttctcttcttttagttaccaagtctctttgtgcaattacaaagagtgactgtaatggttacttcactttcag-----------------------------

upper sequence: Vv18s0001g01180.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA06G12570.1 (Glycine max), 5'ss of exon 8
AGTGTGAAGGACGAAGTGATTGTTGACCTTGTTGACCAGTGCCGCAATTACCAAAAGCGTGTCATGCTTCTTGTGAATGATACTGTgtacgattttactcttttttttctttctttctttttttttcttttccctttgcagtctttctttattttgaacttgaattgatgatactgataaggtggttgcttttctttag
 |||||||||| |||||||||||||| ||||||||||| |||||    |||||||||||||||||||||||||||||  |||||  ||| | ||   || ||| | | ||||  ||      | |  || | |  || ||     |   | |  ||   || | ||   |                             
GGTGTGAAGGAGGAAGTGATTGTTGATCTTGTTGACCAATGCCGTTCGTACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTACgtaagttt---ctttttctctcctttagttaccaagtctctttgtgcaattacaaagagtgactgtaatgg--ttcactttcag-----------------------------

upper sequence: Vv18s0001g01180.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA13G09390.1 (Glycine max), 5'ss of exon 7
AGTGTGAAGGACGAAGTGATTGTTGACCTTGTTGACCAGTGCCGCAATTACCAAAAGCGTGTCATGCTTCTTGTGAATGATACTGTgtacgattttactcttttttttctttctttctttttttttcttttccctttgcagtctttctttattttgaacttgaattgatgatactgataaggtggttgcttttctttag
  || |||  | || ||||||| ||| |||||||||||||| |||   |||||||||||||| ||||||||||| ||||| |||  ||| || |  | |||||    |       ||   ||| |   | |   |  | ||  |  || || | |     | ||   |||||| |||||  |   | |           
GTTGAGAACCAGGAGGTGATTGCTGAACTTGTTGACCAGTGTCGCTCATACCAAAAGCGTGTTATGCTTCTTGTAAATGAGACTTCgtaagaat--attctttaagatgaccaagtccaatttgtctgtgtaattaagaagaatggctgtaatgtttgtgttaagatatgata-tgatagagatttagg----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110697681|gb|EE074884.1|EE074884
EST:     CAGTGCCGCAATTACCAAAAGCGTGTCATGCTTCTTGTGAATGATACTGT                         AGATGAGGAACTTCTATGTCAGGGATTGGCATTGAATGATAACTTGCAGCG
genomic: CAGTGCCGCAATTACCAAAAGCGTGTCATGCTTCTTGTGAATGATACTGTgtacgatttt ... ttttctttagAGATGAGGAACTTCTATGTCAGGGATTGGCATTGAATGATAACTTGCAGCG
EST: gi|32269534|gb|CD718693.1|CD718693
EST:     CAGTGCCGCAATTACCAAAAGCGTGTCATGCTTCTTGTGAATGATACTGT                         AGATGAGGAACTTCTATGTCAGGGATTGGCATTGAATGATAACTTGCAGCG
genomic: CAGTGCCGCAATTACCAAAAGCGTGTCATGCTTCTTGTGAATGATACTGTgtacgatttt ... ttttctttagAGATGAGGAACTTCTATGTCAGGGATTGGCATTGAATGATAACTTGCAGCG
EST: gi|110696101|gb|EE074878.1|EE074878
EST:     CAGTGCCGCAATTACCAAAAGCGTGTCATGCTTCTTGTGAATGATACTGT                         AGATGAGGAACTTCTATGTCAAGGATTGGCATTGAATGATAACTTGCAGCG
genomic: CAGTGCCGCAATTACCAAAAGCGTGTCATGCTTCTTGTGAATGATACTGTgtacgatttt ... ttttctttagAGATGAGGAACTTCTATGTCAGGGATTGGCATTGAATGATAACTTGCAGCG
EST: gi|294966615|gb|GW839606.1|GW839606
EST:     CAGTGCCGCAATTACCAAAAGCGTGTCATGCTTCTTGTGAATGATACTGT                         AGATGAGGGACTTCTATGTCAGGGATTGGCATTGAATGATAACTTGCAGCG
genomic: CAGTGCCGCAATTACCAAAAGCGTGTCATGCTTCTTGTGAATGATACTGTgtacgatttt ... ttttctttagAGATGAGGAACTTCTATGTCAGGGATTGGCATTGAATGATAACTTGCAGCG
EST: gi|110686103|gb|EE063415.1|EE063415
EST:     CAGTGCCGCAATTACCAAAAGCGTGTCATGCTTCTTGTGAATGATACTGT                         AGATGAGGAACTTCTATGTCAGGGATTGGCATTGAATGATAACTTGCAGCG
genomic: CAGTGCCGCAATTACCAAAAGCGTGTCATGCTTCTTGTGAATGATACTGTgtacgatttt ... ttttctttagAGATGAGGAACTTCTATGTCAGGGATTGGCATTGAATGATAACTTGCAGCG
EST: gi|110721049|gb|EE097599.1|EE097599
EST:     GTGCCCCCATTTACCAAA-GCGTGTCATGCCTTCTTGGGAATGATACTGT                         AAATGAGGAACTT
genomic: GTGCCGCAATT-ACCAAAAGCGTGTCATGC-TTCTTGTGAATGATACTGTgtacgatttt ... ttttctttagAGATGAGGAACTT
EST: gi|161717089|gb|FC069551.1|FC069551
EST:     CAGTGCCGCAATTACCAAAAGCGTGTCATGCTTCTTGTGAATGATACTGT                         AGATGAGGAACTTCTATGTCAGGGATTGGCATTGAATGATAACTTGCAGCG
genomic: CAGTGCCGCAATTACCAAAAGCGTGTCATGCTTCTTGTGAATGATACTGTgtacgatttt ... ttttctttagAGATGAGGAACTTCTATGTCAGGGATTGGCATTGAATGATAACTTGCAGCG