1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TCTTTCTCCAATGGGTGATGCCTGTACACGAATGGACCTCACAGCTATCCATCAGATTTTAGTAATGACACACTATAAAGATGATGAAGGAACCAATGAGgtacttgatttctacagatgtaggtttgcagatccccatctttaattctatgctaaattctttaaatgtatgtggataatgcag
species | Vitis vinifera |
transcript | Vv18s0001g00180.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TAAAGATGATGAAGGAACCAATGAG TTATCTTTCCAAGAATGGACACAACAAATGAGAGATATGCTTGAGGCAAGAEST: gi|22012691|gb|BQ797725.1|BQ797725
genomic: TAAAGATGATGAAGGAACCAATGAGgtacttgatt ... gataatgcagTTATCTTTCCAAGAATGGACACAACAAATGAGAGATATGCTTGAGGCAAGA
EST: ATCAGATTTTAGTAATGACACACTATAAAGATGATGAAGGAACCAATGAG TTATCTTTCCAAGAATGGACACAACAAATGAGAGATATGCTTGAGGCAAGAEST: gi|34543647|gb|CF511879.1|CF511879
genomic: ATCAGATTTTAGTAATGACACACTATAAAGATGATGAAGGAACCAATGAGgtacttgatt ... gataatgcagTTATCTTTCCAAGAATGGACACAACAAATGAGAGATATGCTTGAGGCAAGA
EST: ATCAGATTTTAGTAATGACACACTATAAAGATGATGAAGGAACCAATGAG TTATCTTTCCAAGAATGGACACAACAAATGAGAGATATGCTTGAGGCAAGA
genomic: ATCAGATTTTAGTAATGACACACTATAAAGATGATGAAGGAACCAATGAGgtacttgatt ... gataatgcagTTATCTTTCCAAGAATGGACACAACAAATGAGAGATATGCTTGAGGCAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTTCTCCAATGGGTGATGCCTGTACACGAATGGACCTCACAGCTATCCATCAGATTTTAGTAATGACACACTATAAAGATGATGAAGGAACCAATGAGgtacttgatttctacagatgtaggtttgcagatccccatctttaattctatgctaaattctttaaatgtatgtggataatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA