Sequence
atgc intronic sequence ATGC exonic sequenceGGGGAAGCTAGTAGATGCATACAGACTCCTACACAAGGAAAAAGACATGGAAGGTGGCTTCTCATGGTCTGGAAACCCTATTGGAAAgtaaggagttgataccattttccattgaactgtcagcataatttggagattggaaccatgaatgacttcattgcactgttatttcagatgattagatatt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g09970.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G170291_T02 (Zea mays), 5'ss of exon 7
GGGGAAGCTAGTAGATGCATACAGACTCCTACACAAGGAAAAAGACATGGAAGGTGGCTTCTCATGGTCTGGAAACCCTATTGGAAAgtaaggagttgataccattttccattgaactgtcagcataatttggagattggaaccatgaatgac--ttcat-tgcactgttat-ttcagatgattagatatt
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AGGAAAGCTGGTAGATGCTTACAGGCACCTGCACAAAGAAAAGGACATAGACGGTGGCTTCTCTTGGTCCGGTCATCCAATTGGCAAgtaagaaac--atttggctgttc-tgggctagtgggcttcatttggctgttcagtgagaaactgacaatccatatatatatatatatatatatatatatatat-
upper sequence: Vv17s0000g09970.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT3G48425.1 (Arabidopsis thaliana), 5'ss of exon 7
GGGGAAGCTAGTAGATGCATACAGACTCCTACACAAGGAAAAAGACATGGAAGGTGGCTTCTCATGGTCTGGAAACCCTATTGGAAAgtaaggagttgataccattttccattgaactgtcagcataatttggagattggaaccatgaatgacttcattgcactgttatttcagatgattagatatt-
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AGGAAGGCTTGTTGATGCATACCGGTATCTACACAAGGAGCAAGAAATGGAAAGTGGCTTCTCATGGTCGGGGAATCCCATTGGAAAgtgagtggatactacacattttagttttatggcttgga--gtccagaacctccgcatgtttctaaagctat-atattgattttttgttttggttgccatagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110414712|gb|EC980559.1|EC980559EST: GAAAAAGACATGGAAGGTGGCTTCTCATGGTCTGGAAACCCTATTGGAAA GTATAGAGGGAAGAGGATGAGAATAGACTATTTCATAGTTCCAGAGGCACT
genomic: GAAAAAGACATGGAAGGTGGCTTCTCATGGTCTGGAAACCCTATTGGAAAgtaaggagtt ... tcttttgcagGTATAGAGGGAAGAGGATGAGAATAGACTATTTCATAGTTCCAGAGGCACT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGGGAAGCTAGTAGATGCATACAGACTCCTACACAAGGAAAAAGACATGGAAGGTGGCTTCTCATGGTCTGGAAACCCTATTGGAAAgtaaggagttgataccattttccattgaactgtcagcataatttggagattggaaccatgaatgacttcattgcactgttatttcagatgattagatatt
- - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - TGGAAG