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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATGCATGATTTACGCCTCATACATACGGATTTGAAGCCTGAGAATATACTTCTAGTGTCTCCAGAATATGTTAAAGTTCCAGACTACAAGgtactccagatgttaacttgatgtgtattaagtggcatatggttttgctttattattctttctgcatctacaatgcccttgttattgtaacatatatttgttgcattttcag

Basic information

species Vitis vinifera
transcript Vv17s0000g09500.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g09500.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os12g27520.4 (Oryza sativa), 5'ss of exon 7
TTATGCATGATTTACGCCTCATACATACGGATTTGAAGCCTGAGAATATACTTCTAGTGTCTCCAGAATATGTTAAAGTTCCAGACTACAAGgta--ctccagatgttaacttgat--gtgtattaagtggcatatggttttgctttattattctttctgcatctacaatgcccttgttattgtaacatatatttgttgcattttcag----------
|||||||||| || |||||||| || || ||||| ||||||||||| || ||||| || |||||||| ||  ||||||| || || ||||| |||  ||       |  || |  |     | |||       ||  || ||  |||       |||       ||  || |     || || |   || | | |  | | | | ||           
TTATGCATGAATTGCGCCTCATTCACACTGATTTAAAGCCTGAGAACATTCTTCTTGTTTCTCCAGAGTACATTAAAGTGCCCGATTACAAAgtatactttgttcttctacctatttgaccttttagcctttttaacgtcttctttttacccggtttagctgattatgattcaacaatt-ttatgttatctttctaatccttctacaatctctgctag

upper sequence: Vv17s0000g09500.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G063792_T04 (Zea mays), 5'ss of exon 7
TTATGCATGATTTACGCCTCATACATACGGATTTGAAGCCTGAGAATATACTTCTAGTGTCTCCAGAATATGTTAAAGTTCCAGACTACAAGgtactccagatgttaacttgatgtgtattaagtggcatatggttttgctt-tattattctttctgcatctacaatgcccttgttattgtaacatatatttgttgcattttcag------------------
|||||||||| || ||||||||||| || ||||| ||||||||||| || || || || ||||| || ||  ||||||| || || ||||| |||   |   ||||   ||    |  ||| |    |  | | |||  ||| |  ||| |||  | | | ||   ||   | ||    |    | | |  | | | | |                       
TTATGCATGAATTGCGCCTCATACACACTGATTTAAAGCCTGAGAACATTCTCCTTGTTTCTCCGGAGTACATTAAAGTGCCTGATTACAAAgtatatct--tgttcttttatatttaattcacctacccaagatttaccttgtgctatgcttgtt-cttttattgtgtattggtagcgggggtagaaaaatatggtactgatcctcttttttcatttgccag

upper sequence: Vv17s0000g09500.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G063792_T03 (Zea mays), 5'ss of exon 4
--------TTATGCATGATTTACGCCTCATACATACGGATTTGAAGCCTGAGAATATACTTCTAGTGTCTCCAGAATATGTTAAAGTTCCAGACTACAAGgtactccagatgttaacttgatgtgtattaagtggcatatggttttgctt-tattattctttctgcatctacaatgcccttgttattgtaacatatatttgttgcattttcag------------------
        |||||||||| || ||||||||||| || ||||| ||||||||||| || || || || ||||| || ||  ||||||| || || ||||| |||   |   ||||   ||    |  ||| |    |  | | |||  ||| |  ||| |||  | | | ||   ||   | ||    |    | | |  | | | | |                       
TGTTGCAGTTATGCATGAATTGCGCCTCATACACACTGATTTAAAGCCTGAGAACATTCTCCTTGTTTCTCCGGAGTACATTAAAGTGCCTGATTACAAAgtatatct--tgttcttttatatttaattcacctacccaagatttaccttgtgctatgcttgtt-cttttattgtgtattggtagcgggggtagaaaaatatggtactgatcctcttttttcatttgccag

upper sequence: Vv17s0000g09500.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA04G36360.1 (Glycine max), 5'ss of exon 6
TTATGCATGATTTACGCCTCATACATACGGATTTGAAGCCTGAGAATATACTTCTAGTGTCTCCAGAATATGTTAAAGTTCCAGACTACAAGgtactccagatgttaacttga-tgtgtattaagtggcatatggtt--ttgctttattattctttctgcatctacaatgcccttgttattgtaacatatatttgttgcattttcag
||||||||||||||||| | || ||||| ||  |||||||||| || ||||||||||| || ||||| ||| ||||  |||| ||||||||||||| |  | |||| |  |   | | | ||   ||  | |   ||  || ||| |   ||  || | | |  |  | ||   ||  ||  |    |  |                
TTATGCATGATTTACGCATGATCCATACTGACCTGAAGCCTGAAAACATACTTCTAGTTTCACCAGAGTATCTTAAGATTCCTGACTACAAGgtacacttgttgtttatgtatctatattttttatgatacagccttagttacttcagagtttattgtac-tagatgaggcatctgcaatgctggtgtggaag--------------

upper sequence: Vv17s0000g09500.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA17G13440.1 (Glycine max), 5'ss of exon 6
TTATGCATGATTTACGCCTCATACATACGGATTTGAAGCCTGAGAATATACTTCTAGTGTCTCCAGAATATGTTAAAGTTCCAGACTACAAGgtactccagatgttaacttgatgtgtattaagtggcatat-ggttttgctttattattctttctgcatctacaatgcccttgttattgtaacatatatttgttgcattttcag
| |||||||| || ||| | || ||||| ||  |||||||||| || ||||| ||||| || ||||| ||||| |||||||| ||||||||||||||     | ||  ||   || | ||||  ||   | | ||  ||||   | ||| | |  | |    |  |   ||| |||  |     |  |||| |            
TCATGCATGACTTGCGCATGATTCATACTGACCTGAAGCCTGAAAACATACTACTAGTTTCACCAGAGTATGTCAAAGTTCCTGACTACAAGgtacttttctttttgcctacctgcg-attatttgttgttttggaattgc---actatacataatacgaagagcagttcctggttgataggggagttattaggaa---------

upper sequence: Vv17s0000g09500.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA06G18530.1 (Glycine max), 5'ss of exon 6
TTATGCATGATTTACGCCTCATACATACGGATTTGAAGCCTGAGAATATACTTCTAGTGTCTCCAGAATATGTTAAAGTTCCAGACTACAAGgtactccagatgttaacttga-tgtgtattaagtggcatatggttttgctttattattcttt-ctgca-tctacaatgcccttgttattgtaacatatatttgttgcattttcag
|||||||||| |||| | | || ||||| ||  ||||||| || || ||||||||||| || ||||| ||| ||||| ||||||| ||||||||||||  | |||| |  ||| | | | ||   ||  |  ||  || |||   | |   ||    ||| | ||  | ||   ||  ||  |    |  |                
TTATGCATGACTTACACATGATCCATACTGACCTGAAGCCGGAAAACATACTTCTAGTTTCACCAGAGTATCTTAAAATTCCAGATTACAAGgtactcttgttgtttatgtgactatattttttatgatac-tgccttagctacttcagagttgatcgcactatatgaggcatctgcaatgctggtgtggaag--------------

upper sequence: Vv17s0000g09500.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA05G02740.1 (Glycine max), 5'ss of exon 6
TTATGCATGATTTACGCCTCATACATACGGATTTGAAGCCTGAGAATATACTTCTAGTGTCTCCAGAATATGTTAAAGTTCCAGACTACAAGgtactccagatgttaacttgatgtgtattaagtggcatat-ggttttgctttattattctttctgcatctacaatgcccttgttattgtaacatatatttgttgcattttcag
| ||||||||||| ||| | || ||||| ||  |||||||||| || ||||| ||||| || || || ||||| |||||||| ||||||||||| ||     | ||  |    |||| ||||  |    | | ||  ||| |  | ||| | |  | |    |  |   ||| |||  |        | || || |         
TCATGCATGATTTGCGCATGATTCATACTGACCTGAAGCCTGAAAACATACTACTAGTTTCACCCGAGTATGTCAAAGTTCCTGACTACAAGgtgcttttctttttgcccacctgtg-attatttattgttttggacttgttgcactatgcgtaatactaagagcagttcctggttgataggg---gtgttagtag---------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30322713|gb|CD005975.1|CD005975
EST:     AGAATATACTTCTAGTGTCTCCAGAATATGTTAAAGTTCCAGACTACAAG                         GTTTCATCCCGTTCACCCAAGGATGGTTCTTACTTTAAGAGAGTACCAAAA
genomic: AGAATATACTTCTAGTGTCTCCAGAATATGTTAAAGTTCCAGACTACAAGgtactccaga ... gcattttcagGTTTCATCCCGTTCACCCAAGGATGGTTCTTACTTTAAGAGAGTACCAAAA
EST: gi|110373955|gb|EC938383.1|EC938383
EST:     AGAATATACTTCTAGTGTCTCCAGAATATGTTAAAGTTCCAGACTACAAG                         GTTTCATCCCGTTCACCCAAGGATGGTTCTTACTTTAAGAGAGTACCAAAA
genomic: AGAATATACTTCTAGTGTCTCCAGAATATGTTAAAGTTCCAGACTACAAGgtactccaga ... gcattttcagGTTTCATCCCGTTCACCCAAGGATGGTTCTTACTTTAAGAGAGTACCAAAA
EST: gi|110362754|gb|EC926306.1|EC926306
EST:     AGAATATACTTCTAGTGTCTCCAGAATATGTTAAAGTTCCAGACTACAAG                         GTTTCATCCCGTTCACCCAAGGATGGTTCTTACTTTAAGAGAGTACCAAAA
genomic: AGAATATACTTCTAGTGTCTCCAGAATATGTTAAAGTTCCAGACTACAAGgtactccaga ... gcattttcagGTTTCATCCCGTTCACCCAAGGATGGTTCTTACTTTAAGAGAGTACCAAAA
EST: gi|32272087|gb|CD721246.1|CD721246
EST:     AGAATATACTTCTAGTGTCTCCAGAATATGTTAAAGTTCCAGACTACAAG                         GTTTCATCCCGTTCACCCAAGGATGGTTCTTACTTTAAGAGAGTACCAAAA
genomic: AGAATATACTTCTAGTGTCTCCAGAATATGTTAAAGTTCCAGACTACAAGgtactccaga ... gcattttcagGTTTCATCCCGTTCACCCAAGGATGGTTCTTACTTTAAGAGAGTACCAAAA
EST: gi|32268109|gb|CD717268.1|CD717268
EST:     AGAATATACTTCTAGTGTCTCCAGAATATGTTAAAGTTCCAGACTACAAG                         GTTTCATCCCGTTCACCCAAGGATGGTTCTTACTTTAAGAGAGTACCAAAA
genomic: AGAATATACTTCTAGTGTCTCCAGAATATGTTAAAGTTCCAGACTACAAGgtactccaga ... gcattttcagGTTTCATCCCGTTCACCCAAGGATGGTTCTTACTTTAAGAGAGTACCAAAA
EST: gi|30255726|gb|CB971858.1|CB971858
EST:     AGAATATACTTCTAGTGTCTCCAGAATATGTTAAAGTTCCAGACTACAAG                         GTTTCATCCCGTTCACCCAAGGATGGTTCTTACTTTAAGAGAGTACCAAAA
genomic: AGAATATACTTCTAGTGTCTCCAGAATATGTTAAAGTTCCAGACTACAAGgtactccaga ... gcattttcagGTTTCATCCCGTTCACCCAAGGATGGTTCTTACTTTAAGAGAGTACCAAAA
EST: gi|30324825|gb|CD008087.1|CD008087
EST:     AGAATATACTTCTAGTGTCTCCAGAATATGTTAAAGTTCCAGACTACAAG                         GTTTCATCCCGTTCACCCAAGGATGGTTCTTACTTTAAGAGAGTACCAAAA
genomic: AGAATATACTTCTAGTGTCTCCAGAATATGTTAAAGTTCCAGACTACAAGgtactccaga ... gcattttcagGTTTCATCCCGTTCACCCAAGGATGGTTCTTACTTTAAGAGAGTACCAAAA
EST: gi|32268970|gb|CD718129.1|CD718129
EST:     AGAATATACTTCTAGTGTCTCCAGAATATGTTAAAGTTCCAGACTACAAG                         GTTTCATCCCGTTCACCCAAGGATGGTTCTTACTTTAAGAGAGTACCAAAA
genomic: AGAATATACTTCTAGTGTCTCCAGAATATGTTAAAGTTCCAGACTACAAGgtactccaga ... gcattttcagGTTTCATCCCGTTCACCCAAGGATGGTTCTTACTTTAAGAGAGTACCAAAA
EST: gi|32248754|gb|CD714573.1|CD714573
EST:     AGAATATACTTCTAGTGTCTCCAGAATATGTTAAAGTTCCAGACTACAAG                         GTTTCATCCCGTTCACCCAAGGATGGTTCTTACTTTAAGAGAGTACCAAAA
genomic: AGAATATACTTCTAGTGTCTCCAGAATATGTTAAAGTTCCAGACTACAAGgtactccaga ... gcattttcagGTTTCATCCCGTTCACCCAAGGATGGTTCTTACTTTAAGAGAGTACCAAAA
EST: gi|71856051|gb|DT005106.1|DT005106
EST:     AGAATATACTTCTAGTGTCTCCAGAATATGTTAAAGTTCCAGACTACAAG                         GTTTCATCCCGTTCA
genomic: AGAATATACTTCTAGTGTCTCCAGAATATGTTAAAGTTCCAGACTACAAGgtactccaga ... gcattttcagGTTTCATCCCGTTCA