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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGTGGGAAAGCAGCAGAGTTTGGCCCCCTTAAAGACGGCTACATGTTTGAGTCATCAACAGGCCTATCACGAATgtaagatcttttgcccaactcctttaattcatttaaagataaatgttagggataaatcattcctttgtctggatgcacagtactgcagatcaaaatgataaattttgaggtttcatttaagttgaagtgatgaccactcatttaaattttctag

Basic information

species Vitis vinifera
transcript Vv17s0000g08490.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g08490.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA02G12480.1 (Glycine max), 5'ss of exon 8
CCAGTGGGAAAGCAGCAGAGTTTGGCCCCCTTAAAGACGGCTACATGTTTGAGTCATCAACAGGCCTATCACGAATgtaagatcttttg-cccaactcctttaattcattta-aagataaatg---ttagggataaatcattcctttgtctggatgcacagtactgcagatcaaaatgataaattttgaggtttcatttaagttgaagtgatgaccactcatttaaattttctag
||||||||||||||||||| |||||  |||| ||||| ||||| ||||||||||   |||| || || ||| | ||||| |    |       || |  | |  | |||  | || || ||      | |  || |   |||    ||| || |                                                                                 
CCAGTGGGAAAGCAGCAGAATTTGGTGCCCTAAAAGATGGCTATATGTTTGAGTGTACAACGGGTCTCTCAAGGATgtatgcctgtgaaatttaatttttgttgtccatgcataacattaacagatcttgacatgagagattgtgctgtttgtag--------------------------------------------------------------------------------

upper sequence: Vv17s0000g08490.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA01G06540.1 (Glycine max), 5'ss of exon 9
CCAGTGGGAAAGCAGCAGAGTTTGGCCCCCTTAAAGACGGCTACATGTTTGAGTCATCAACAGGCCTATCACGAATgtaagatcttttgcccaactcctttaattcatttaaagataaatgttagggataaatcattcctttgtctggatgcacagtact-gcagatcaaaatgataaattttgaggtttcatttaagttgaagtgatgaccactcatttaaattttctag
||||||||||||| ||||| |||||  |||| ||||| ||||| ||||||||||   ||||||| | |||| | ||||| |      ||   || |   | | ||   ||    ||  ||   |   | | ||| ||    ||   |  ||     |  | | ||                                                                  
CCAGTGGGAAAGCTGCAGAATTTGGTGCCCTAAAAGATGGCTATATGTTTGAGTGTACAACAGGTCAATCAAGGATgtatggc----tgtggaatt---taattttgcttgtctatgcataacattaaaagatc-ttgacatgagagattgtgtgttgtttgtag------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110419697|gb|EC985945.1|EC985945
EST:     CCCCTTAAAGACGGCTACATGTTTGAGTCATCAACAGGCCTATCACGAAT                         GCTGCTGAGCTCACCAACATGTCCAGTCCTTGAGGCTCTTGGGAAGAAGCT
genomic: CCCCTTAAAGACGGCTACATGTTTGAGTCATCAACAGGCCTATCACGAATgtaagatctt ... aattttctagGCTGCTGAGCTCACCAACATGTCCAGTCCTTGAGGCTCTTGGGAAGAAGCT
EST: gi|27755420|gb|CB036175.1|CB036175
EST:     CCCCTTAAAGACGGCTACATGTTTGAGTCATCAACAGGCCTATCACGAAT                         GCTGCTGAGCTCACCAACATGTCCAGTCCTTGAGGCTCTTGGGAAGAAGCT
genomic: CCCCTTAAAGACGGCTACATGTTTGAGTCATCAACAGGCCTATCACGAATgtaagatctt ... aattttctagGCTGCTGAGCTCACCAACATGTCCAGTCCTTGAGGCTCTTGGGAAGAAGCT
EST: gi|34550415|gb|CF518633.1|CF518633
EST:     CCCCTTAAAGACGGCTACATGTTTGAGTCATCAACAGGCCTATCACGAAT                         GCTGCTGAGCTCACCAACATGTCCAGTCCTTGAGGCTCTTGGGAAGAAGCT
genomic: CCCCTTAAAGACGGCTACATGTTTGAGTCATCAACAGGCCTATCACGAATgtaagatctt ... aattttctagGCTGCTGAGCTCACCAACATGTCCAGTCCTTGAGGCTCTTGGGAAGAAGCT
EST: gi|22015330|gb|BQ800364.1|BQ800364
EST:     CCCCTTAAAGACGGCTACATGTTTGAGTCATCAACAGGCCTATCACGAAT                         GCTGCTGAGCTCACCAACATGTCCAGTCCTTGAGGCTCTTGGGAAGAAGCT
genomic: CCCCTTAAAGACGGCTACATGTTTGAGTCATCAACAGGCCTATCACGAATgtaagatctt ... aattttctagGCTGCTGAGCTCACCAACATGTCCAGTCCTTGAGGCTCTTGGGAAGAAGCT
EST: gi|46918420|gb|CN547749.1|CN547749
EST:     CCCCTTAAAGACGGCTACATGTTTGAGTCATCAACAGGCCTATCACGAAT                         GCTGCTGAGCTCACCAACATGTCCAGTCCTTGAGGCTCTTGGGAAGAAGCT
genomic: CCCCTTAAAGACGGCTACATGTTTGAGTCATCAACAGGCCTATCACGAATgtaagatctt ... aattttctagGCTGCTGAGCTCACCAACATGTCCAGTCCTTGAGGCTCTTGGGAAGAAGCT
EST: gi|110408373|gb|EC974008.1|EC974008
EST:     CCCCTTAAAGACGGCTACATGTTTGAGTCATCAACAGGCCTATCACGAAT                         GCTGCTGAGCTCACCAACATGTCCAGTCCTTGAGGCTCTTGGGAAGAAGCT
genomic: CCCCTTAAAGACGGCTACATGTTTGAGTCATCAACAGGCCTATCACGAATgtaagatctt ... aattttctagGCTGCTGAGCTCACCAACATGTCCAGTCCTTGAGGCTCTTGGGAAGAAGCT