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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTGTCCAAGCTATTTATGTGCCTGCTGATGACTTGACAGATCCAGCTCCAGCAACCACTTTTGCCCATCTTGATGCCACAACAGTGTTGTCTCGTCAGgtatttaatccagtcttgttttttatctgaagcaataggtacatttttccattttctggcattttaactctagtgtcgatttcttgtaaccag

Basic information

species Vitis vinifera
transcript Vv17s0000g02900.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g02900.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os05g47980.1 (Oryza sativa), 5'ss of exon 7
ATCTGTCCAAGCTATTTATGTGCCTGCTGATGACTTGACAGATCCAGCTCCAGCAACCACTTTTGCCCATCTTGATGCCACAACAGTGTTGTCTCGTCAGgtatttaatccagtcttgttttttatctgaagcaataggtacatttttccattttctggcattttaactctagtgtcgatttcttgtaaccag
||||||||||||||||||||||||||||||||||||||| ||||| ||||| || || |||||||| ||||||||||| || || |||||||| || |||||                || |  | ||||   ||||  |    ||    || | ||  |||| | |||  | | |    |   || |     
ATCTGTCCAAGCTATTTATGTGCCTGCTGATGACTTGACGGATCCTGCTCCTGCTACTACTTTTGCACATCTTGATGCTACTACTGTGTTGTCACGACAGgt----------------ttgtccaactgacctaatacatcgtgttaataatgtcct--cattatgacttgaatttgctatctgtgcag----

upper sequence: Vv17s0000g02900.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os01g49190.1 (Oryza sativa), 5'ss of exon 7
ATCTGTCCAAGCTATTTATGTGCCTGCTGATGACTTGACAGATCCAGCTCCAGCAACCACTTTTGCCCATCTTGATGCCACAACAGTGTTGTCTCGTCAGgtat-ttaatccagtcttgttttttatctgaagcaataggtacatttttccattttctggcattttaactctagtgtcgatttcttgtaaccag
|||||| |||||||||||||||||||||||||||||||||||||| || || || || || ||||||||||||||||| || || |||||||| || |||||||    | | | |||| |||   || ||||  | ||  ||   ||| | ||  |       ||||  | || ||  ||| |   |       
ATCTGTTCAAGCTATTTATGTGCCTGCTGATGACTTGACAGATCCTGCCCCTGCTACTACATTTGCCCATCTTGATGCTACTACTGTGTTGTCACGACAGgtatgcctacctaatctt-tttacaatttgaaatattaa-tat-ctttcctatcataaatggatttatttgtactg--gatatgcag-------

upper sequence: Vv17s0000g02900.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G041275_T01 (Zea mays), 5'ss of exon 7
ATCTGTCCAAGCTATTTATGTGCCTGCTGATGACTTGACAGATCCAGCTCCAGCAACCACTTTTGCCCATCTTGATGCCACAACAGTGTTGTCTCGTCAGgtatttaatccagtcttgttttttatctgaagcaataggtacatttttccattttctggcattttaactctagtgtcgatttcttgtaaccag
|||||| |||||||||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||||||||||| || || |||||||| |||||||||||    || | ||| | | |  |  |||    |   ||    | |   |  | |     | | |   ||| ||   ||  ||| |     
ATCTGTTCAAGCTATTTATGTGCCTGCTGATGACTTGACAGATCCTGCTCCTGCTACCACCTTTGCCCATCTTGATGCTACTACTGTGTTGTCACGTCAGgtatt----cctgccttatgtctagttagaatttctgcatattgatgttgttgctgttatggtatgatgttagcgt---ttctttgcag----

upper sequence: Vv17s0000g02900.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G021331_T01 (Zea mays), 5'ss of exon 7
ATCTGTCCAAGCTATTTATGTGCCTGCTGATGACTTGACAGATCCAGCTCCAGCAACCACTTTTGCCCATCTTGATGCCACAACAGTGTTGTCTCGTCAGgtatttaatccagtcttgttttttatctgaagcaataggtacatt-tttccattttctggcattttaactctagtgtcgatttcttgtaaccag
 |||||||| ||||| ||||||||||||||||||||||||||||| ||||| || || || ||||||||||||||||| ||||| |||||||| || ||||| |    |||| |    || | |  |||  |   |||||||||  ||| |   || ||   |  |   ||  |||  |               
GTCTGTCCAGGCTATATATGTGCCTGCTGATGACTTGACAGATCCTGCTCCTGCTACTACCTTTGCCCATCTTGATGCTACAACTGTGTTGTCACGGCAGgttt---gtccatttggtttatgtgactgttgtgttaggtacatgatttgctcattgtgatttcatgcttcctgtgcag---------------

upper sequence: Vv17s0000g02900.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G113408_T01 (Zea mays), 5'ss of exon 7
ATCTGTCCAAGCTATTTATGTGCCTGCTGATGACTTGACAGATCCAGCTCCAGCAACCACTTTTGCCCATCTTGATGCCACAACAGTGTTGTCTCGTCAGgtatttaatccagtcttgttttttatctgaagcaataggtacatttttccattttctggcattttaactctagtgtcgatttcttgtaaccag
|||||| || || || || |||||||| ||||||||||| ||||| ||||| || || || ||||||||||||||||| ||||| |||||||| || ||||| | |  | || |         | | |    ||  | || |   ||   ||  |  ||   ||    |  ||                    
ATCTGTGCAGGCCATCTACGTGCCTGCCGATGACTTGACGGATCCTGCTCCTGCTACTACCTTTGCCCATCTTGATGCTACAACTGTGTTGTCACGACAGgtttgtg-ttcatttgctacaactgtgttgtacatgatgtgctcattgtgatggtg-ggagcttcgtgtgcag--------------------

upper sequence: Vv17s0000g02900.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA10G41330.1 (Glycine max), 5'ss of exon 7
ATCTGTCCAAGCTATTTATGTGCCTGCTGATGACTTGACAGATCCAGCTCCAGCAACCACTTTTGCCCATCTTGATGCCACAACAGTGTTGTCTCGTCAGgtatttaatccagtcttgttttttat----ctgaagcaataggtacatttttccattttctggcattttaactctagtgtcgatttcttgtaaccag
 |||||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||||||||| ||  | |||||||||||||||||||| || |||||  || ||   ||  | || ||||     |||| |||||       ||| |     |      ||||| | | |  ||    ||  | |       
CTCTGTCCAAGCTATCTATGTGCCTGCTGATGACTTGACAGATCCTGCTCCTGCTACCACTTTTGCTCACTTGGATGCCACAACAGTGTTGTCACGACAGgt--ttgattttgttgtattatttaaatagctgatgcaattaccttttttgttatcatctaaatattttgattttgatgatatttaatag-------

upper sequence: Vv17s0000g02900.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA20G25920.1 (Glycine max), 5'ss of exon 7
ATCTGTCCAAGCTATTTATGTGCCTGCTGATGACTTGACAGATCCAGCTCCAGCAACCACTTTTGCCCATCTTGATGCCACAACAGTGTTGTCTCGTCAGgtatttaatccagtcttgttttttatctgaagcaataggtacatttttccattttctggcattttaac---tctagtgtcgatttcttgtaaccag
 |||||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||||||||| ||  | ||||||||||||||||| || || ||||| || ||| || |  | || ||||  | |    ||   | ||  |||  | ||     ||  | ||    | |  | | |||    | | |  ||
CTCTGTCCAAGCTATCTATGTGCCTGCTGATGACTTGACAGATCCTGCTCCTGCTACCACTTTTGCTCACTTGGATGCCACAACAGTGTTATCACGACAGgt-ttgaattca-ttgtattatttaagt-agctgatgcattcacatttttagttatcatcagctcaatattttttattttgatgatgt-tgaatag

upper sequence: Vv17s0000g02900.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT5G08680.1 (Arabidopsis thaliana), 5'ss of exon 7
ATCTGTCCAAGCTATTTATGTGCCTGCTGATGACTTGACAGATCCAGCTCCAGCAACCACTTTTGCCCATCTTGATGCCACAACAGTGTTGTCTCGTCAGgtatttaatccagtctt-----gttttttatctgaagcaataggtacatttttccattttctggcattttaac-----tctagtgtcgatttcttgtaaccag
 ||||||||||| || ||||| ||||||||||| ||||||||||| ||||| || || |||||||| ||  | ||||||||||| ||| | ||  | ||||| |  | |     |||     | || || ||   |  | |  | | || ||   ||  |     | | |  |     | || | |   |||| | |    ||
CTCTGTCCAAGCCATCTATGTCCCTGCTGATGATTTGACAGATCCTGCTCCTGCCACAACTTTTGCTCACTTGGATGCCACAACTGTGCTTTCAAGACAGgtgtgaactttctccttctgatgcttcttttcaatataattctgcatatcttgtaatgcttcataaatctgtcatctttatactttttctttcctatgtgtag

upper sequence: Vv17s0000g02900.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT5G08690.1 (Arabidopsis thaliana), 5'ss of exon 7
ATCTGTCCAAGCTATTTATGTGCCTGCTGATGACTTGACAGATCCAGCTCCAGCAACCACTTTTGCCCATCTTGATGCCACAACAGTGTTGTCTCGTCAGgtattta---atccagtcttgttttttatctgaagcaatag--gtacatttttccattttctggcattttaactctagtgtcgatttcttgtaaccag
 || |||||||| || ||||| ||||||||||| ||||| ||||| ||||| || || |||||||| ||  | || |||||||| ||| ||||  | |||||    |    ||   |  | |||  | | | ||   ||    ||  | |  ||      |||  || || |  || || ||  |  ||| |    ||
CTCAGTCCAAGCCATCTATGTCCCTGCTGATGATTTGACGGATCCTGCTCCTGCCACAACTTTTGCTCACTTGGACGCCACAACCGTGCTGTCAAGACAGgtgggaacatgtctcctgatatttcctttttaaaaatatttctgtgtaatgctcataaagctgatatctttatgctcgtctctttcccttatg--tag

upper sequence: Vv17s0000g02900.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT5G08670.1 (Arabidopsis thaliana), 5'ss of exon 7
ATCTGTCCAAGCTATTTATGTGCCTGCTGATGACTTGACAGATCCAGCTCCAGCAACCACTTTTGCCCATCTTGATGCCACAACAGTGTTGTCTCGTCAGgtatttaatccagtcttgttttttatctgaagcaataggtacatttttccattttctggcattttaactctagtgtcgatttcttgtaaccag----
 || |||||||| || ||||| ||||||||||| ||||| ||||| ||||| || || |||||||| ||  | || |||||||| ||| | ||  | ||||| |  | |   ||||| | |  |   |    ||||  |||| | | |  || |  |     |   |      |     | | ||||||        
CTCAGTCCAAGCCATCTATGTACCTGCTGATGATTTGACTGATCCTGCTCCTGCTACAACTTTTGCTCACTTGGACGCCACAACTGTGCTCTCAAGACAGgtgtgaatttgtgtctt-tctgatgcttcttacaat--gtacttgtgtaaatctcataaaggtgacatctagatacttctattttgtaaatgtgaag

upper sequence: Vv17s0000g02900.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: EFJ38525 (Selaginella moellendorffii), 5'ss of exon 7
ATCTGTCCAAGCTATTTATGTGCCTGCTGATGACTTGACAGATCCAGCTCCAGCAACCACTTTTGCCCATCTTGATGCCACAACAGTGTTGTCTCGTCAGgtatttaatccagtcttgttttttatctgaagcaataggtacatttttccattt-tctggcattttaactctagtgtcgatttcttgtaaccag
 || || ||||| || || ||||||||||||||  | |||||||| |||||||| || ||||| || ||||||||||| || || ||| | || || ||||||       |     |||| ||    || |||  |  | |||  ||  | ||| | | |||                                
CTCAGTGCAAGCCATCTACGTGCCTGCTGATGATCTAACAGATCCTGCTCCAGCGACGACTTTCGCTCATCTTGATGCAACTACTGTGCTTTCACGCCAGgtac----agcgacactgttcttatcttgcagccttttg-acaccttcgcttttgttttgcag-------------------------------

upper sequence: Vv17s0000g02900.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: EFJ31624 (Selaginella moellendorffii), 5'ss of exon 7
ATCTGTCCAAGCTATTTATGTGCCTGCTGATGACTTGACAGATCCAGCTCCAGCAACCACTTTTGCCCATCTTGATGCCACAACAGTGTTGTCTCGTCAGgtatttaatccagtcttgttttttatctgaagcaataggtacatttttccattt-tctggcattttaactctagtgtcgatttcttgtaaccag
 || || ||||| || || ||||||||||||||  | |||||||| |||||||| || ||||| || ||||||||||| || || ||| | || || ||||||       |     |||| ||    || |||  |  | |||  ||  | ||| | | |||                                
CTCAGTGCAAGCCATCTACGTGCCTGCTGATGATCTAACAGATCCTGCTCCAGCGACGACTTTCGCTCATCTTGATGCAACTACTGTGCTTTCACGCCAGgtac----agcgacactgttcttatcttggagccttttg-acaccttcacttttgttttgcag-------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30328286|gb|CD011548.1|CD011548
EST:     CAGCAACCACTTTTGCCCATCTTGATGCCACAACAGTGTTGTCTCGTCAG                         ATTTCTGAGCTTGGTATTTATCCTGCTGTTGACCCCTTGGATTCCACATCT
genomic: CAGCAACCACTTTTGCCCATCTTGATGCCACAACAGTGTTGTCTCGTCAGgtatttaatc ... ttgtaaccagATTTCTGAGCTTGGTATTTATCCTGCTGTTGACCCCTTGGATTCCACATCT
EST: gi|110688264|gb|EE066616.1|EE066616
EST:     CAGCAACCACTTTTGCCCATCTTGATGCCACAACAGTGTTGTCTCGTCAG                         ATTTCTGAGCTTGGTATTTATCCTGCTGTTGACCCCTTGGATTC-ACATCT
genomic: CAGCAACCACTTTTGCCCATCTTGATGCCACAACAGTGTTGTCTCGTCAGgtatttaatc ... ttgtaaccagATTTCTGAGCTTGGTATTTATCCTGCTGTTGACCCCTTGGATTCCACATCT
EST: gi|30328075|gb|CD011337.1|CD011337
EST:     CAGCAACCACTTTTGCCCATCTTGATGCCACAACAGTGTTGTCTCGTCAG                         ATTTCTGAGCTTGGTATTTATCCTGCTGTTGACCCCTTGGATTCCACATCT
genomic: CAGCAACCACTTTTGCCCATCTTGATGCCACAACAGTGTTGTCTCGTCAGgtatttaatc ... ttgtaaccagATTTCTGAGCTTGGTATTTATCCTGCTGTTGACCCCTTGGATTCCACATCT
EST: gi|32247472|gb|CD713291.1|CD713291
EST:     CAGCAACCACTTTTGCCCATCTTGATGCCACAACAGTGTTGTCTCGTCAG                         ATTTCTGAGCTTGGTATTTATCCTGCTGTTGACCCCTTGGATTCCACATCT
genomic: CAGCAACCACTTTTGCCCATCTTGATGCCACAACAGTGTTGTCTCGTCAGgtatttaatc ... ttgtaaccagATTTCTGAGCTTGGTATTTATCCTGCTGTTGACCCCTTGGATTCCACATCT
EST: gi|30133973|gb|CB919312.1|CB919312
EST:     CAGCAACCACTTTTGCCCATCTTGATGCCACAACAGTGTTGTCTCGTCAG                         ATTTCTGAGCTTGGTATTTATCCTGCTGTTGACCCCTTGGATTCCACATCT
genomic: CAGCAACCACTTTTGCCCATCTTGATGCCACAACAGTGTTGTCTCGTCAGgtatttaatc ... ttgtaaccagATTTCTGAGCTTGGTATTTATCCTGCTGTTGACCCCTTGGATTCCACATCT
EST: gi|32269428|gb|CD718587.1|CD718587
EST:     CAGCAACCACTTTTGCCCATCTTGATGCCACAACAGTGTTGTCTCGTCAG                         ATTTCTGAGCTTGGTATTTATCCTGCTGTTGACCCCTTGGATTCCACATCT
genomic: CAGCAACCACTTTTGCCCATCTTGATGCCACAACAGTGTTGTCTCGTCAGgtatttaatc ... ttgtaaccagATTTCTGAGCTTGGTATTTATCCTGCTGTTGACCCCTTGGATTCCACATCT
EST: gi|156738949|gb|EV243062.1|EV243062
EST:     CAGCAACCACTTTTGCCCATCTTGATGCCACAACAGTGTTGTCTCGTCAG                         ATTTCTGAGCTTGGTATTTATCCTGCTGTTGACCCCTTGGATTCCACATCT
genomic: CAGCAACCACTTTTGCCCATCTTGATGCCACAACAGTGTTGTCTCGTCAGgtatttaatc ... ttgtaaccagATTTCTGAGCTTGGTATTTATCCTGCTGTTGACCCCTTGGATTCCACATCT
EST: gi|30323044|gb|CD006306.1|CD006306
EST:     CAGCAACCACTTTTGCCCATCTTGATGCCACAACAGTGTTGTCTCGTCAG                         ATTTCTGAGCTTGGTATTTATCCTGCTGTTGACCCCTTGGATTCCACATCT
genomic: CAGCAACCACTTTTGCCCATCTTGATGCCACAACAGTGTTGTCTCGTCAGgtatttaatc ... ttgtaaccagATTTCTGAGCTTGGTATTTATCCTGCTGTTGACCCCTTGGATTCCACATCT
EST: gi|32247772|gb|CD713591.1|CD713591
EST:     CAGCAACCACTTTTGCCCATCTTGATGCCACAACAGTGTTGTCTCGTCAG                         ATTTCTGAGCTTGGTATTTATCCTGCTGTTGACCCCTTGGATTCCACATCT
genomic: CAGCAACCACTTTTGCCCATCTTGATGCCACAACAGTGTTGTCTCGTCAGgtatttaatc ... ttgtaaccagATTTCTGAGCTTGGTATTTATCCTGCTGTTGACCCCTTGGATTCCACATCT
EST: gi|30129011|gb|CB914350.1|CB914350
EST:     CAGCAACCACTTTTGCCCATCTTGATGCCACAACAGTGTTGTCTCGTCAG                         ATTTCTGAGCTTGGTATTTATCCTGCTGTTGACCCCTTGGATTCCACATCT
genomic: CAGCAACCACTTTTGCCCATCTTGATGCCACAACAGTGTTGTCTCGTCAGgtatttaatc ... ttgtaaccagATTTCTGAGCTTGGTATTTATCCTGCTGTTGACCCCTTGGATTCCACATCT
EST: gi|161716057|gb|FC065545.1|FC065545
EST:     CAGCAACCACTTTTGCCCATCTTGATGCCACAACAGTGTTGTCTCGTCAG                         ATTTCCGAGCTTGGTATTTATCCTGCTGTTGACCCCTTGGATTCCACATCT
genomic: CAGCAACCACTTTTGCCCATCTTGATGCCACAACAGTGTTGTCTCGTCAGgtatttaatc ... ttgtaaccagATTTCTGAGCTTGGTATTTATCCTGCTGTTGACCCCTTGGATTCCACATCT
EST: gi|32249058|gb|CD714877.1|CD714877
EST:     CAGCAACCACTTTTGCCCATCTTGATGCCACAACAGTGTTGTCTCGTCAG                         ATTTCTGAGCTTGGTATTTATCCTGCTGTTGACCCCTTGGATTCCACATCT
genomic: CAGCAACCACTTTTGCCCATCTTGATGCCACAACAGTGTTGTCTCGTCAGgtatttaatc ... ttgtaaccagATTTCTGAGCTTGGTATTTATCCTGCTGTTGACCCCTTGGATTCCACATCT
EST: gi|27586507|gb|CB009202.1|CB009202
EST:     CTTTTGCCCATCTTGATGCCACAACAGTGTTGTCTCGTCAG                         ATTTCTGAGCTTGGTATTTATCCTGCTGTTGACCCCTTGGATTCCACATCT
genomic: CTTTTGCCCATCTTGATGCCACAACAGTGTTGTCTCGTCAGgtatttaatc ... ttgtaaccagATTTCTGAGCTTGGTATTTATCCTGCTGTTGACCCCTTGGATTCCACATCT
EST: gi|30296136|gb|CB972930.1|CB972930
EST:     CAGCAACCACTTTTGCCCATCTTGATGCCACAACAGTGTTGTCTCGTCAG                         ATTTCCGAGCTTGGTATTTATCCTGCTGTTGACCCCTTGGATTCCACATCT
genomic: CAGCAACCACTTTTGCCCATCTTGATGCCACAACAGTGTTGTCTCGTCAGgtatttaatc ... ttgtaaccagATTTCTGAGCTTGGTATTTATCCTGCTGTTGACCCCTTGGATTCCACATCT
EST: gi|110728631|gb|EE104368.1|EE104368
EST:     CAGCAACCACTTTTGCCCATCTTGATGCCACAACAGTGTTGTCTCGTCAG                         ATTTCTGAGCTTGGTATTTATCCTGCTGTTGACCCCTTGGATTCCACATCT
genomic: CAGCAACCACTTTTGCCCATCTTGATGCCACAACAGTGTTGTCTCGTCAGgtatttaatc ... ttgtaaccagATTTCTGAGCTTGGTATTTATCCTGCTGTTGACCCCTTGGATTCCACATCT
EST: gi|32267434|gb|CD716397.1|CD716397
EST:     CAGCAACCACTTTTGCCCATCTTGATGCCACAACAGTGTTGTCTCGTCAG                         ATTTCTGAGCTTGGTATTTATCCTGCTGTTGACCCCTTGGATTCCACATCT
genomic: CAGCAACCACTTTTGCCCATCTTGATGCCACAACAGTGTTGTCTCGTCAGgtatttaatc ... ttgtaaccagATTTCTGAGCTTGGTATTTATCCTGCTGTTGACCCCTTGGATTCCACATCT