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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATTGGAATTCTCTTGGATTTTGTTTGGTATGAGCCTCTTACAAGATCAAAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatacttggcattctccactgattcagagtaggatgaatgcagtatagatattcaaatagtaatgttggttttgttttctatag

Basic information

species Vitis vinifera
transcript Vv17s0000g02680.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g02680.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os07g46280.1 (Oryza sativa), 5'ss of exon 7
GGATTGGAATTCTCTTGGATTTTGTTTGGTATGAGCCTCTTACAAGATCAAAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatacttggcattctccactgattcagagtaggatgaatgc-------------agtatagatattca-----aatagtaatgttggttttgttttctatag------------------------------------------------------------------------
||||||||||||||||||||||||| |||||||| ||  | |        || ||||| |     ||||| || ||  | ||||| |||||  | |||||||| ||||   ||  |    |  ||| |||||  |   || |  |              |||  ||||  |||     | ||| | | | | |||| | |  ||  |                                                                        
GGATTGGAATTCTCTTGGATTTTGTCTGGTATGAACCATTCAGTGACAGCAATGCTGATAGGGCTGCAGCACAGAGGGCAAGAGATTTTCACCTCGGATGgtaaaaat--ctgaaaacaccatctggttcaggatcaaattatcgattatttactccagagttcagatgctcaggtctagtagcagtctagattttttgtgatagtgtagccacaaactgaaagtctgaaagtacccttttttttggatcagcaaactgacactatgatctccttaaag

upper sequence: Vv17s0000g02680.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os03g49610.1 (Oryza sativa), 5'ss of exon 7
GGATTGGAATTCTCTTGGATTTTGTTTGGTATGAGCCTCTTACAAGATCAAAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatact----tggcattctccactgattcagagtaggatgaatgcagtata-gatattcaaatagtaatgttggttttgttttctatag
 ||| |||||  |  | ||||||  ||||||||| ||||| || |  ||||  |  ||| |   ||||||||||||| |||||||||| |||||||| |||||  |  |      |  |||    ||  | |  ||  |  | |  || || | |  |||  | | | |       |  ||   ||        
AGATCGGAATAGTTCTCGATTTTAATTGGTATGAACCTCTAACTAACTCAACTGAAGACCAAGCAGCAGCTCAAAGAGCCAGAGACTTCCATGTTGGTTGgtaagaccatagaagtaacatgtgacaaagttaaaggttttgtttgatacaatttccgatgctgataaaaatcaactacttcaattcag-----

upper sequence: Vv17s0000g02680.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA07G11310.1 (Glycine max), 5'ss of exon 7
GGATTGGAATTCTCTTGGATTTTGTTTGGTATGAGCCTCTTACAAGATCAAAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatacttggcattctccactgattcagagtaggatgaatgcagtatagatattcaaatagta-atgttggttttgttttctatag------------
||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||| ||||||||||||||||||||||||| | ||  ||  ||||      | |   | | ||| ||     | |  |  | |    | |  || |  ||       |     ||              
GGATTGGGATCCTCTTGGATTTTGTTTGGTATGAGCCTCTTACAAGATCAAAGGCCGACAATTTAGCAGCTCAAAGAGCCAGAGACTTTCATGTTGGATGgtaaacatctttaacatttgtttttaag--aaaatagtatatgcactgactgtacacaggatttttacactttcaaccaatcacaaatcacaatatatgata

upper sequence: Vv17s0000g02680.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA09G30910.1 (Glycine max), 5'ss of exon 7
GGATTGGAATTCTCTTGGATTTTGTTTGGTATGAGCCTCTTACAAGATCAAAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatacttggcattctccactgattcagagtaggatgaatgcagtatagatattcaaatagtaatgttggttttgttttctatag--------------------------------------------
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||| |||||||||||||| |||||||||| ||||  || |||||      | | | ||  |   ||      |||| |  | || |  ||  |||||   ||||    |  | ||                                            
GGATTGGGATCCTCTTGGATTTTGTTTGGTATGAGCCTCTTACAAGATCAAAGGCTGACAATTTTGCAGCTCAAAGAGCCAGAGACTTTCATATTGGATGgtaaaaatctttagcattt---gttaactgaggatcctatattgcaagtacaagtctttagttatgaatgtgaattttcccctgcaaagactttcacacgcttgataacaataataatgcttaaattcaccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351038587|gb|FQ464453.1|FQ464453
EST:     AAGGCTGACAACCTAGCAGCTCACAGATCCAGAGACTTTCATGTTGGATG                         GTTTATTCACTCCATTGTATACCGG-GAGTATCCCGAGAACAATGCAAGAG
genomic: AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatac ... ttttctatagGTTTATTCACCCCATTGTATAT-GGAGAGTATCC-GAGAACAATGCAAGAG
EST: gi|349807989|gb|FQ402380.1|FQ402380
EST:     AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATG                         GTTTATTCACCCCATTGTATACGGGGAGTATCCGAGAACAATGCAAGAGAT
genomic: AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatac ... ttttctatagGTTTATTCACCCCATTGTATATGGAGAGTATCCGAGAACAATGCAAGAGAT
EST: gi|349819506|gb|FQ413390.1|FQ413390
EST:     AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATG                         GTTTATTCACCCCATTGTATACGGGGGAGTATCCGAGAACAATGCAAGAGA
genomic: AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatac ... ttttctatagGTTTATTCACCCCATTGTATA-TGGAGAGTATCCGAGAACAATGCAAGAGA
EST: gi|351042229|gb|FQ442696.1|FQ442696
EST:     AAGGCTGACAACCTAGCAGCTCANAGATCCAGAGACTTTCATGTTGGATG                         GTTTATTCACCCCATT
genomic: AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatac ... ttttctatagGTTTATTCACCCCATT
EST: gi|351055479|gb|FQ442275.1|FQ442275
EST:     AAGGCTGACAACCTAGCAGCTCANAGATCCAGAGACTTTCATGTTGGATG                         GTTTATTCACCCCATTGTATACGGGGAGTATCCGAGAACAATGCAAGAGAT
genomic: AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatac ... ttttctatagGTTTATTCACCCCATTGTATATGGAGAGTATCCGAGAACAATGCAAGAGAT
EST: gi|351015813|gb|FQ431768.1|FQ431768
EST:     AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATG                         GTTTATTCACCCCATTGTATACGGGGAGTATCCGAGAACAATGCAAGAGAT
genomic: AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatac ... ttttctatagGTTTATTCACCCCATTGTATATGGAGAGTATCCGAGAACAATGCAAGAGAT
EST: gi|349820199|gb|FQ406875.1|FQ406875
EST:     AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATG                         GTTTATTCACCCCATTGTATACGGGGAGTATCC
genomic: AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatac ... ttttctatagGTTTATTCACCCCATTGTATATGGAGAGTATCC
EST: gi|349828779|gb|FQ419112.1|FQ419112
EST:     AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATG                         GTTTATTCACCCCATTGTATACGGGGAGTATCCGAGAACAACGCAAGAGAT
genomic: AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatac ... ttttctatagGTTTATTCACCCCATTGTATATGGAGAGTATCCGAGAACAATGCAAGAGAT
EST: gi|351033074|gb|FQ446427.1|FQ446427
EST:     AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATG                         GTTTATTCACCCCATTGTATACGGGGAGTATCCGAGAACAATGCAAGAGAT
genomic: AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatac ... ttttctatagGTTTATTCACCCCATTGTATATGGAGAGTATCCGAGAACAATGCAAGAGAT
EST: gi|352794098|gb|FQ479340.1|FQ479340
EST:     AAGGCTGACAACCTAGCGGCTCANAGATCCAGAGACTTTCATGTTGGATG                         GTTTATTCACCCCATTGTATACGGGGAGTATCCGAGAACAATGCAAGAGAT
genomic: AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatac ... ttttctatagGTTTATTCACCCCATTGTATATGGAGAGTATCCGAGAACAATGCAAGAGAT
EST: gi|351045661|gb|FQ440846.1|FQ440846
EST:     AAGGCTGACAACCTAGCAGCTCANAGATCCAGAGACTTTCATGTTGGATG                         GTTTATTCACCCCATTGTATACNGG-GAGTATCCGAGAACAATGCAAGAGA
genomic: AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatac ... ttttctatagGTTTATTCACCCCATTGTATAT-GGAGAGTATCCGAGAACAATGCAAGAGA
EST: gi|351041781|gb|FQ455991.1|FQ455991
EST:     AAGGCTGACAACCTAGCAGCTCANAGATCCAGAGACTTTCATGTTGGATG                         GTTTATTCACCCCATTGTATACGGGGAGTATCCGAGAACAATGCAAGAGAT
genomic: AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatac ... ttttctatagGTTTATTCACCCCATTGTATATGGAGAGTATCCGAGAACAATGCAAGAGAT
EST: gi|351022837|gb|FQ428746.1|FQ428746
EST:     AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATG                         GTTTATTCACCCCATTGTATACGGGGAGTATCCGAGAACAATGCAAGAGAT
genomic: AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatac ... ttttctatagGTTTATTCACCCCATTGTATATGGAGAGTATCCGAGAACAATGCAAGAGAT
EST: gi|352790099|gb|FQ479709.1|FQ479709
EST:     AAGGCTGACAACCTAGCAGCTCAGAGATCCAGAGACTTTCATGTTGGATG                         GTTTATTCACCCCATTGTATACGGGGAGTATCCGAGAACAATGCAAGAGAT
genomic: AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatac ... ttttctatagGTTTATTCACCCCATTGTATATGGAGAGTATCCGAGAACAATGCAAGAGAT
EST: gi|349824288|gb|FQ417699.1|FQ417699
EST:     AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATG                         GTTTATTCACCCCATTGTATACNGG-GAGTATCCGAGAACAATGCAAGAGA
genomic: AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatac ... ttttctatagGTTTATTCACCCCATTGTATAT-GGAGAGTATCCGAGAACAATGCAAGAGA
EST: gi|351023766|gb|FQ448317.1|FQ448317
EST:     AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATG                         GTTTATTCACCCCATTGTATACGGGGAGTATCCGAGAACAATGCAAGAGAT
genomic: AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatac ... ttttctatagGTTTATTCACCCCATTGTATATGGAGAGTATCCGAGAACAATGCAAGAGAT
EST: gi|351042412|gb|FQ442879.1|FQ442879
EST:     AAGGCTGACAACCTAGCAGCTCANAGATCCAGAGACTTTCATGTTGGATG                         GTTTATTCACCCCATTGTATACGGGGAGTATCCGAGAACAATGCAAGAGAT
genomic: AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatac ... ttttctatagGTTTATTCACCCCATTGTATATGGAGAGTATCCGAGAACAATGCAAGAGAT
EST: gi|349828121|gb|FQ415449.1|FQ415449
EST:     AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATG                         GTTTATTCACCCCATTGTATACGGGGAGTATCCGAGAACAATGCAGGAGAT
genomic: AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatac ... ttttctatagGTTTATTCACCCCATTGTATATGGAGAGTATCCGAGAACAATGCAAGAGAT
EST: gi|349821869|gb|FQ413040.1|FQ413040
EST:     AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATG                         GTTTATTCACCCCCTTGTATACGGGGAGTATCCGAGAACCATGCAAGAGAT
genomic: AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatac ... ttttctatagGTTTATTCACCCCATTGTATATGGAGAGTATCCGAGAACAATGCAAGAGAT
EST: gi|349807852|gb|FQ402243.1|FQ402243
EST:     AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATG                         GTTTATTCACCCCATTGTATACGGGGAGTATCCGAGAACAATGCAAGAGAT
genomic: AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatac ... ttttctatagGTTTATTCACCCCATTGTATATGGAGAGTATCCGAGAACAATGCAAGAGAT
EST: gi|351038429|gb|FQ464295.1|FQ464295
EST:     AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATG                         GTTTATTCACCCCATTGTATACGGGGAGTATCCGAGAACAATGCAAGAGAT
genomic: AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatac ... ttttctatagGTTTATTCACCCCATTGTATATGGAGAGTATCCGAGAACAATGCAAGAGAT
EST: gi|349830823|gb|FQ417121.1|FQ417121
EST:     AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATG                         GTTTATTCACCCCATTGTATACGGGGAGTATCCGAGAACAATGCAAGAGAT
genomic: AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatac ... ttttctatagGTTTATTCACCCCATTGTATATGGAGAGTATCCGAGAACAATGCAAGAGAT
EST: gi|349824165|gb|FQ417552.1|FQ417552
EST:     AAGGCTGACAACCTAGCAGCTCANAGATCCAGAGACTTTCATGTTGGATG                         GTTTATTCACCCCATTGTATACGGGGAGTATCCGAGAACAATGCANGAGAT
genomic: AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatac ... ttttctatagGTTTATTCACCCCATTGTATATGGAGAGTATCCGAGAACAATGCAAGAGAT
EST: gi|351049247|gb|FQ428990.1|FQ428990
EST:     AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATG                         GTTTATTCACCCCATTGTATA
genomic: AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatac ... ttttctatagGTTTATTCACCCCATTGTATA
EST: gi|351042839|gb|FQ451133.1|FQ451133
EST:     AAGGCTGACAACCTAGCAGCTCANAGATCCAGAGACTTTCATGTTGGATG                         GTTTATTCACCCCATTGTATACGGGGAGTATCCGAGAACAATGCANGAGAT
genomic: AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatac ... ttttctatagGTTTATTCACCCCATTGTATATGGAGAGTATCCGAGAACAATGCAAGAGAT
EST: gi|351021685|gb|FQ437070.1|FQ437070
EST:     AAGGCTGACAACCTACCAGCTCAAAGATCCAGAGACTTTCATGTTGGATG                         GTTTATTCACCCCATTGTATACGGGGAGTATCCGAGAACAATGCAAGAGAT
genomic: AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatac ... ttttctatagGTTTATTCACCCCATTGTATATGGAGAGTATCCGAGAACAATGCAAGAGAT
EST: gi|351019070|gb|FQ426569.1|FQ426569
EST:     AAGGCTGACAACCTAGCAGCTCANAGATCCAGAGACTTTCATGTTGGATG                         GTTTATTCACCCCATTGTATACCGG-GAGTATCCGAGAACAATGCAAGAGA
genomic: AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatac ... ttttctatagGTTTATTCACCCCATTGTATAT-GGAGAGTATCCGAGAACAATGCAAGAGA
EST: gi|30132936|gb|CB918275.1|CB918275
EST:     AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATG                         GTTTATTCACCCCATTGTATACGGGGAGTATCCGAGAACAATGCAAGAGAT
genomic: AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatac ... ttttctatagGTTTATTCACCCCATTGTATATGGAGAGTATCCGAGAACAATGCAAGAGAT
EST: gi|351038347|gb|FQ461039.1|FQ461039
EST:     AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATG                         GTTTATTCACCCCATTGTATACGGGGAGTATCCGAGAACAATGCAAGAAAT
genomic: AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatac ... ttttctatagGTTTATTCACCCCATTGTATATGGAGAGTATCCGAGAACAATGCAAGAGAT
EST: gi|351042390|gb|FQ442857.1|FQ442857
EST:     AAGGCTGACAACCTAGCAGCTCANAGATCCAGAGACTTTCATGTTGGATG                         GTTTATTCACCCCATTGTATACGGGGAGTATCCGAGAACAATGCAAGAGAT
genomic: AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatac ... ttttctatagGTTTATTCACCCCATTGTATATGGAGAGTATCCGAGAACAATGCAAGAGAT
EST: gi|351016597|gb|FQ424024.1|FQ424024
EST:     AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATG                         GTTTATTCACCCCATTGTATACGGGGAGTATCCGAGAACAATGCAAGAGAT
genomic: AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatac ... ttttctatagGTTTATTCACCCCATTGTATATGGAGAGTATCCGAGAACAATGCAAGAGAT
EST: gi|349820204|gb|FQ406880.1|FQ406880
EST:     AAGGCTGACAACCTAGCACCTCAAAGATCCAGAGACTTTCATGTTGGATG                         GTTTATTCACCCCATTGTATACCGG-GAGTATCCGAGAACAATGCAAGAGA
genomic: AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatac ... ttttctatagGTTTATTCACCCCATTGTATAT-GGAGAGTATCCGAGAACAATGCAAGAGA
EST: gi|351016480|gb|FQ423907.1|FQ423907
EST:     AAGGCTGACAACCTAACAGCTCAAAGATCCAGAGACTTTCATGTTGGATG                         GTTTATTCACCCCATTGTATACGGGGAGTATCCGAGAACAATGCAAGAGAT
genomic: AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatac ... ttttctatagGTTTATTCACCCCATTGTATATGGAGAGTATCCGAGAACAATGCAAGAGAT
EST: gi|351024209|gb|FQ423632.1|FQ423632
EST:     AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATG                         GTTTATCCACCCCATTGTATACGGGGAGTATCCGAGAACAATGCAAGAGAT
genomic: AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatac ... ttttctatagGTTTATTCACCCCATTGTATATGGAGAGTATCCGAGAACAATGCAAGAGAT
EST: gi|349818794|gb|FQ409328.1|FQ409328
EST:     AAAGCTGACAACCTAGCAGCTCACAGATCCAGAGACTTTCATGTTGGATG                         GTTTATTCACCCCATTGTATACGGGGAGTATCCGAGAACAATGCAA
genomic: AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatac ... ttttctatagGTTTATTCACCCCATTGTATATGGAGAGTATCCGAGAACAATGCAA
EST: gi|351032953|gb|FQ461842.1|FQ461842
EST:     AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATG                         GTTTATTCACCCCATTGTATACGGGGAGTATCCGAGAACAATGCAAGAGAT
genomic: AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatac ... ttttctatagGTTTATTCACCCCATTGTATATGGAGAGTATCCGAGAACAATGCAAGAGAT
EST: gi|349811511|gb|FQ409507.1|FQ409507
EST:     AAGGCTGACAACCTAGCAGCTCAAAGATCCCGAGACTTTCATGTTGGATG                         GTTTATTCACCCCATTGTATACGGGGAGTATCCGAGAACAATGCAAGAGAT
genomic: AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatac ... ttttctatagGTTTATTCACCCCATTGTATATGGAGAGTATCCGAGAACAATGCAAGAGAT
EST: gi|30256158|gb|CB972001.1|CB972001
EST:     AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATG                         GTTTATTCACCCCATTGTATACGGGGAGTATCCGAGAACAATGCAAGAGAT
genomic: AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatac ... ttttctatagGTTTATTCACCCCATTGTATATGGAGAGTATCCGAGAACAATGCAAGAGAT
EST: gi|349829906|gb|FQ422219.1|FQ422219
EST:     AAGGCTGACAACCTAGCAGCTCANAGATCCAGAGACTTTCATGTTGGATG                         GTTTATTCACCCCATTGTATACGGGGAGTATCCGAGAACAATGCAAGAGAT
genomic: AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatac ... ttttctatagGTTTATTCACCCCATTGTATATGGAGAGTATCCGAGAACAATGCAAGAGAT
EST: gi|349829069|gb|FQ419601.1|FQ419601
EST:     AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATG                         GTTTATTCACCCCATTGTATACGGGGAGTATCCGAGAACAATGCAAGAGAT
genomic: AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatac ... ttttctatagGTTTATTCACCCCATTGTATATGGAGAGTATCCGAGAACAATGCAAGAGAT
EST: gi|351012024|gb|FQ429830.1|FQ429830
EST:     AAGGCTGACAACCTAGCAGCTCANAGATCCAGAGACTTTCATGTTGGATG                         GTTTATTCACCCCATTGTATACGGGGAGTATCCGAGAACAATGCAAGAGAT
genomic: AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatac ... ttttctatagGTTTATTCACCCCATTGTATATGGAGAGTATCCGAGAACAATGCAAGAGAT
EST: gi|349828601|gb|FQ418336.1|FQ418336
EST:     AAGGCTGACAACCTAGCAGCTCANAGATCCAGAGACTTTCATGTTGGATG                         GTTTATTCACCCCATTGTATACGGGGAGTATCCGAGAACAATGCAAGAGAT
genomic: AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatac ... ttttctatagGTTTATTCACCCCATTGTATATGGAGAGTATCCGAGAACAATGCAAGAGAT
EST: gi|351054304|gb|FQ450387.1|FQ450387
EST:     AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATG                         GTTTATTCACCCCATTGTATACGGGGAGTATCCGAGAACAATGCAAGAGAT
genomic: AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatac ... ttttctatagGTTTATTCACCCCATTGTATATGGAGAGTATCCGAGAACAATGCAAGAGAT
EST: gi|351055113|gb|FQ440452.1|FQ440452
EST:     AAGGCTGACAACCTAGCAGCTCANAGATCCAGAGACTTTCATGTTGGATG                         GTTTATTCACCCCATTGTATACGGGGAGTATCCGAGAACAATGCAAGAGAT
genomic: AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatac ... ttttctatagGTTTATTCACCCCATTGTATATGGAGAGTATCCGAGAACAATGCAAGAGAT
EST: gi|110694692|gb|EE072021.1|EE072021
EST:     AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATG                         GTTTATTCACCCCATTGTATACGGGGAGTATCCGAGAACAATGCAAGAGAT
genomic: AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatac ... ttttctatagGTTTATTCACCCCATTGTATATGGAGAGTATCCGAGAACAATGCAAGAGAT
EST: gi|352798358|gb|FQ480383.1|FQ480383
EST:     AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATG                         GTTTATTCACCCCATTGTATACGGGGAGTATCCGAGAACAATGCAAGAGAT
genomic: AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatac ... ttttctatagGTTTATTCACCCCATTGTATATGGAGAGTATCCGAGAACAATGCAAGAGAT
EST: gi|351055976|gb|FQ453437.1|FQ453437
EST:     AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATG                         GTTTATTCACCCCATTGTATACGGGGAGTATCCGAGAACAATGCAAGAGAT
genomic: AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatac ... ttttctatagGTTTATTCACCCCATTGTATATGGAGAGTATCCGAGAACAATGCAAGAGAT
EST: gi|110685849|gb|EE062930.1|EE062930
EST:     AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATG                         GTTTATTCACCCCATTGTATACGGGGAGTATCCGAGAACAATGCAAGAGAT
genomic: AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatac ... ttttctatagGTTTATTCACCCCATTGTATATGGAGAGTATCCGAGAACAATGCAAGAGAT
EST: gi|352794496|gb|FQ481729.1|FQ481729
EST:     AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATG                         GTTTATTCACCCCATTGTATACGGGGAGTATCCGAGAACAATGCAAGAGAT
genomic: AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatac ... ttttctatagGTTTATTCACCCCATTGTATATGGAGAGTATCCGAGAACAATGCAAGAGAT
EST: gi|349828289|gb|FQ416242.1|FQ416242
EST:     AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATG                         GTTTATTCACCCCATTGTATACGGGGAGTATCCGAGAACAATGCAAGAGAT
genomic: AAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatac ... ttttctatagGTTTATTCACCCCATTGTATATGGAGAGTATCCGAGAACAATGCAAGAGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGATTGGAATTCTCTTGGATTTTGTTTGGTATGAGCCTCTTACAAGATCAAAGGCTGACAACCTAGCAGCTCAAAGATCCAGAGACTTTCATGTTGGATGgtataaatacttggcattctccactgattcagagtaggatgaatgcagtatagatattcaaatagtaatgttggttttgttttctatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA