Sequence
atgc intronic sequence ATGC exonic sequenceGAACAAGTTGAGGAGCGACTCGAATTTTATGACAAGGGAATTGCACCTCGGAAAAACATTGATGTTATGAAAGCTGCCATTGAAATTACTCAAAACAATGgtgagctatatatggaaaagatcatagtgatatttttaatatttcaatacttgatgctgaactatcagtatttccaaaacatctattttgttgtgggggg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g01720.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os03g22880.1 (Oryza sativa), 5'ss of exon 7
GAACAAGTTGAGGAGCGACTCGAATTTTATGACAAGGGAATTGCACCTCGGAAAAACATTGATGTTATGAAAGCTGCCATTGAAATTACTCAAAACAATGgtgagctatatatggaaaagatcatagtgatatttttaatatttcaatacttgatgctgaactatcagtatttccaaaacatctattttgttgtgggggg
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------------------TTAGACTTCTATGACAAGGGTGTTGCACCTCGTAAAAACCTTGATGTGATGAAAGCTGCGATAGACAGCATGGTTAATGATGCCACAAATGATGTTGATGgtaagttggcta-acttcggttgccagaaatgctaacattgagctacatgttactatcatttataaactgtgcattgtgcag
upper sequence: Vv17s0000g01720.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os07g46720.2 (Oryza sativa), 5'ss of exon 6
GAACAAGTTGAGGAGCGACTCGAATTTTATGACAAGGGAATTGCACCTCGGAAAAACATTGATGTTATGAAAGCTGCCATTGAAATTACTCAAAACAATGgtgagctatatatggaaaagatcatagtgatatttttaatatttcaatacttgatgctga-actatcagtatttccaaaacatctattttgttgtgggggg--------------------------
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------------------CTAGACTTCTATGACAAGGGTATTGCACCGCGTAAGAACCTTGATGTGATGAAAGCTGCTATTAATGATAT----GACAAATGCCGTCT-CAGAGGATGGTGGTGgtaagggctctttgttcattcatatctgtcagattggtacaacttgtatttcatgtaagcatattaatttttaatttacacgctggccaaaaaaattctttcag
upper sequence: Vv17s0000g01720.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G110233_T03 (Zea mays), 5'ss of exon 7
GAACAAGTTGAGGAGCGACTCGAATTTTATGACAAGGGAATTGCACCTCGGAAAAACATTGATGTTATGAAAGCTGCCATTGAAATTAC--TCAAA---ACAATGgtgagctatatatggaaaagatcatagtgatatttttaat--atttc-----aatacttgatgctgaactatcagtatttccaaaaca-tctattttgttgtgggggg-------------------------------------
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------------------CTGGAATTCTATGACAAGGGTGTTGCGCCTCGTAAAAATCTTGATGTGATGAAAGCTGCTATTGACAGTATGGTCAATGACACCTTAATGGATGATG-ATGgtaaggcaggtaagcataggctaattccatctcttagaaatgcaaactgtttagttttaattggctgtaggacaatgcattactcagttgcatttatggctgaatatttccctgttcttcaacgtctgcag
upper sequence: Vv17s0000g01720.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G144995_T03 (Zea mays), 5'ss of exon 1
GAACAAGTTGAGGAGCGACTCGAATTTTATGACAAGGGAATTGCACCTCGGAAAAACATTGATGTTATGAAAGCTGCCATTGAAATTAC--TCAA---AACAATGgtgagctat-atatggaaaagatcatagtgatatttttaa-----------tatttcaatacttgatgctgaactatcagtatttccaaaacatctattttgttgtgggggg----------------------------
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------------------CTGGAATTCTATGACAAGGGTGTTGCGCCTCGTAAAAACCTTGATGTGATGAAAGCCGCTATTGACAGCATGGTCAATGGCACCTCAATGGATGATGATGgtaagcatatgctagttctatctcttagaaatgcaaactgttttaattttaattgcttatagaggacaatgcattacacgttgcatttgtggttgagtaatatttccctgttcttcaacttgtgcag
upper sequence: Vv17s0000g01720.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA07G11560.1 (Glycine max), 5'ss of exon 7
GAACAAGTTGAGGAGCGACTCGAATTTTATGACAAGGGAATTGCACCTCGGAAAAACATTGATGTTATGAAAGCTGCCATTGAAATTACTCAAAACAATGgtgagctatatatggaaaagatcatagtgatatttttaatatttcaatacttgatgctgaactatcagtatttccaa-aacatctattttgttgtgggggg--------
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GAGCAAGTTGAGGAGCGACTTGATTTTTATGACAAGGGAGTTGCCCCTCGTAAGAACATAGATGTCATGAAGTCTGCTATTGAAAGTGTTGAAACCGAATgtaaga-----atggggggatctaccccctagttccc----tcccaacatccttgatcgttcccttaatcccttgagtaatatgcatttggttgtgactatatctcaga
upper sequence: Vv17s0000g01720.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA17G13770.1 (Glycine max), 5'ss of exon 7
GAACAAGTTGAGGAGCGACTCGAATTTTATGACAAGGGAATTGCACCTCGGAAAAACATTGATGTTATGAAAGCTGCCATTGAAATTACTCAAAACAATGgtgagctatatatggaaaagatcatagtgatatttttaatatttc-aatacttgatgctgaactatcagtatttccaaaacatctattttgttgtgggggg--
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GAGCAAGTTGAGGAACGACTTGACTTTTATGACAAGGGAGTTGCCCCTCGCAAGAACATAGATGTCATGCAGGCTGCTATTGAAAGTGCTGAAAACAAAGgtaggg---atgaagagatagctactgtccccttttagttttccccaaaacacgaaagatataaatttggttgtgaatgtaaatgaacttatattggccacta
upper sequence: Vv17s0000g01720.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA05G03150.1 (Glycine max), 5'ss of exon 7
GAACAAGTTGAGGAGCGACTCGAATTTTATGACAAGGGAATTGCACCTCGGAAAAACATTGATGTTATGAAAGCTGCCATTGAAATTACTCAAAACAATGgtgagctatatatggaaaagatcatagtgatatttttaatatttcaatacttgatgctgaactatcagtatttccaaaacatctatt--ttgttgtgggggg
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GAGCAAGTTGAGGAACGACTTGACTTTTATGACAAGGGAGTTGCCCCTCGCAAGAACATAGATGTCATGCAGGCTGCTATTGAAAGTGCTGAAAACAAAGgtaggg-atgaagagatccccttttatggctttccccaaaacatgaaagatataaatttggttgtgaatgtaaatgaa-cttatattggccattatatgttgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32459972|gb|CD801146.1|CD801146EST: GAAAAACATTGATGTTATGAAAGCTGCCATTGAAATTACTCAAAACAATG ACACGGAGGACAAAGCAACCACTGAGCCTTCA
genomic: GAAAAACATTGATGTTATGAAAGCTGCCATTGAAATTACTCAAAACAATGgtgagctata ... acattttcagACACGGAGGACAAAGCAACCACTGAGCCTTCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAACAAGTTGAGGAGCGACTCGAATTTTATGACAAGGGAATTGCACCTCGGAAAAACATTGATGTTATGAAAGCTGCCATTGAAATTACTCAAAACAATGgtgagctatatatggaaaagatcatagtgatatttttaatatttcaatacttgatgctgaactatcagtatttccaaaacatctattttgttgtgggggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtggggg