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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGTGGGACATTTTATCCAATGGTGGGCCAATGCAAGAGATGATTCATATTCCAAAGGGCCAAACAAGTAGCAACTGTGTTTCTCTTCTTCGCCCTAATgtgagttagcaactaccatttgagaatctacaattcccatggctcgttacttttagatgtttgttcatgttgttctttctttttcacatgtctttgcag

Basic information

species Vitis vinifera
transcript Vv16s0100g00670.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0100g00670.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA20G29580.1 (Glycine max), 5'ss of exon 8
CAAGTGGGACATTTTATCCAATGGTGGGCCAATGCAAGAGATGATTCATATTCCAAAGGGCCAAACAAGTAGCAACTGTGTTTCTCTTCTTCGCCCTAATgtgagttagcaactaccatttgagaatctacaattcccatggctcgttacttttagatgtttgttcatgttgttctttctttttcacatgtctttgcag----
  |||||||||| || ||||||||||| |||||||| |||||| | |||||| | || || |||  |  | | ||||||||||||||||| ||  ||||||| |||    |  |     | || ||  |||||     |||   | |     | |||||   |||  |||| | |     || |     ||    | |     
TGAGTGGGACATCTTGTCCAATGGTGGACCAATGCAGGAGATGGTACATATTGCCAAAGGACAAGGACATGGAAACTGTGTTTCTCTTCTCCGTGCTAATgtaagt-gctagttctaggtagacaagttacaacaag-atgaaacctagtagtaagatgcaggttt-tgttttacgcaaattatttagggttaaggaaacaaa

upper sequence: Vv16s0100g00670.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA10G38280.1 (Glycine max), 5'ss of exon 8
CAAGTGGGACATTTTATCCAATGGTGGGCCAATGCAAGAGATGATTCATATTCCAAAGGGCCAAACAAGTAGCAACTGTGTTTCTCTTCTTCGCCCTAATgtgagttagcaactaccatttgagaatctacaattc--ccatggctcgttacttttagatgtttgttcatgttgttctttctttttcacatgtctttgcag---
  |||||||||| || ||||||||||| |||||||| |||||| | |||||| | || || |||  |  | | ||||| ||||||||||||||  ||||||| ||| || |  |     | || |   || ||       |    | || |  | ||| | ||  || | |    |  ||   ||  |   || || | |    
TGAGTGGGACATCTTGTCCAATGGTGGACCAATGCAGGAGATGGTACATATTGCCAAAGGACAAGGACATGGAAACTGCGTTTCTCTTCTTCGTGCTAATgtaagt-agtagttttatgtagacaggttataacaggatgaaacttagtaatatgtaggttttgttttaggcaaattatttagttaaa---gttttaggaaaca