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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTTTGACAGCTGGGCGTCAGCTTGCAAGAAGTTTAGAGTCTCAGTCACTGAATGATCTGGGATTTTCCAAAAGATATGTGAGGTGCTTGCAGgtatgatctgggaatttccatataaataatgaaattgttctttttccttaattttttttacctcttcagtgtttatatgtttgtattcctacttttaacag

Basic information

species Vitis vinifera
transcript Vv16s0100g00500.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0100g00500.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA16G32250.1 (Glycine max), 5'ss of exon 7
GGTTTTGACAGCTGGGCGTCAGCTTGCAAGAAGTTTAGAGTCTCAGTCACTGAATGATCTGGGATTTTCCAAAAGATATGTGAGGTGCTTGCAGgtatgatctggga----atttccatataaataatgaa-----attgttctttttccttaatt--ttttttacctcttcagtgtttatatgtt-tgtattcctacttttaacag----------------
||| |||||||| ||||| ||||||||||  | ||| ||||  || |||||||||||| |||| ||||| |||||||| ||||| || ||||||||||| | |        | ||| |  |  ||  |||      | || | |||  | |  |      | ||   | || | | | ||||| || | ||  | ||   ||  | |                
GGTATTGACAGCAGGGCGCCAGCTTGCAAAGATTTTGGAGTTGCAATCACTGAATGATTTGGGCTTTTCTAAAAGATACGTGAGATGTTTGCAGgtatgctgttaagtttgagttcgaagtttatgttgagtgttgagtggtatttaccatagagaaaactattcattttttattctatatattttctctaaccttatagttgcctgctacgatggttgacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37187404|gb|CF606757.1|CF606757
EST:     AGTCGCTGAATGATCTGGGATTTTCCAAAAGATATGTGAGGTGCTTGCAG                         ATATCTGAGGTTGTCAATAGTATGAAAGACTTGATTGACTTCTGCAGGGAG
genomic: AGTCACTGAATGATCTGGGATTTTCCAAAAGATATGTGAGGTGCTTGCAGgtatgatctg ... cttttaacagATATCCGAGGTTGTCAATAGTATGAAAGACTTGATTGACTTCTGCAGGGAG
EST: gi|161705769|gb|FC056640.1|FC056640
EST:     AGTCGCTGAATGATCTGGGATTTTCCAAAAGATATGTGAGGTGCTTGCAG                         ATATCCGAAGTTGTCAATAGTATGAAAGACTTGATTGACTTCTGCAGGGAG
genomic: AGTCACTGAATGATCTGGGATTTTCCAAAAGATATGTGAGGTGCTTGCAGgtatgatctg ... cttttaacagATATCCGAGGTTGTCAATAGTATGAAAGACTTGATTGACTTCTGCAGGGAG
EST: gi|161720327|gb|FC071180.1|FC071180
EST:     AGTCGCTGAATGATCTGGGATTTTCCAAAAGATATGTGAGGTGCTTGCAG                         ATATCCGAGGTTGTCAATAGTATGAAAGACTTGATTGACTTCTGCAGGGAG
genomic: AGTCACTGAATGATCTGGGATTTTCCAAAAGATATGTGAGGTGCTTGCAGgtatgatctg ... cttttaacagATATCCGAGGTTGTCAATAGTATGAAAGACTTGATTGACTTCTGCAGGGAG
EST: gi|161708994|gb|FC058786.1|FC058786
EST:     AGTCGCTGAATGATCTGGGATTTTCCAAAAGATATGTGAGGTGCTTGCAG                         ATATCCGAGGTTGTCAATAGTATGAAAGACTTGATTGACTTCTGCAGGGAG
genomic: AGTCACTGAATGATCTGGGATTTTCCAAAAGATATGTGAGGTGCTTGCAGgtatgatctg ... cttttaacagATATCCGAGGTTGTCAATAGTATGAAAGACTTGATTGACTTCTGCAGGGAG
EST: gi|161710271|gb|FC060655.1|FC060655
EST:     AGTCGCTGAATGATCTGGGATTTTCCAAAAGATATGTGAGGTGCTTGCAG                         ATATCCGAGGTTGTCAATAGTATGAAAGACTTGATTGACTTCTGCAGGGAG
genomic: AGTCACTGAATGATCTGGGATTTTCCAAAAGATATGTGAGGTGCTTGCAGgtatgatctg ... cttttaacagATATCCGAGGTTGTCAATAGTATGAAAGACTTGATTGACTTCTGCAGGGAG