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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTTTCCATCACCAGATGCAATCCAAATTGCTAACAACCTCTCAAACCTGGGCCAAATATACAACAGAGAAGACATTTCAACAGATATTTTGgtaagggaatcacaactaaatcaatctaaataagcttatgtcaacaaaacccaggagatccattgttttttgaaatcttttgtgctctaag

Basic information

species Vitis vinifera
transcript Vv16s0100g00480.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0100g00480.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G044247_T01 (Zea mays), 5'ss of exon 7
GACTTTCCATCACCAGATGCAATCCAAATTGCTAACAACCTCTCAAACCTGGGCCAAATATACAACAGAGAAGACATTTCAACAGATATTTTGgtaaggg-----aatcacaactaaatcaatctaaataagcttatgtcaa---caaaacccaggagatccat-tgttttttgaaatcttttgtgctctaag---------------------
||  ||||||| | |||||||||||| ||||| |||||| | ||| |||| || || ||||||||||| ||||| ||     |    | |   ||||| |     | |  ||| || |  |   |   |    || | ||     |           |   ||| |     |  |||      |||  || |                      
GATCTTCCATCGCAAGATGCAATCCAGATTGCAAACAACATATCAGACCTTGGTCAGATATACAACAGGGAAGATATGGATTCCAGCAGTCCAgtaagtgtcgacagttgcaattatactacgttgcgtgcatttctttctctctcttttttttttggtcacatgtacaagtacaaagaaagagtgaactgactgacaagtgttttggaaaaag

upper sequence: Vv16s0100g00480.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA20G29480.2 (Glycine max), 5'ss of exon 6
GACTTTCCATCACCAGATGCAATCCAAATTGCTAACAACCTCTCAAACCTGGGCCAAATATACAACAGAGAAGACATTTCAACAGATATTTTGgtaagggaatcacaactaaatcaatctaaata--agcttatgtcaaca-aaacccaggagatccattgttttttgaaatcttttgtgctctaag-------------------------------
||  |||||||| ||||||||| ||||||||| ||||| ||||| |||||||||||||| || ||||||||||||  |||||||||| | ||||| ||   || | |||      | | ||| ||  |  | ||   ||   |||  ||   |     | || |||  |    |  || | |  |                                 
GATCTTCCATCAGCAGATGCAAACCAAATTGCCAACAATCTCTCCAACCTGGGCCAAATCTATAACAGAGAAGACCCTTCAACAGATGTCTTGgtgagt--atgaaaacccttcaagtttaagtaccaattcatacaaaagcaaatacaattgtgttttagtctttatatgcttagtgaggtacatatctaactttttacatttatgtgtgacacaag

upper sequence: Vv16s0100g00480.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA10G38370.2 (Glycine max), 5'ss of exon 7
GACTTTCCATCACCAGATGCAATCCAAATTGCTAACAACCTCTCAAACCTGGGCCAAATATACAACAGAGAAGACATTTCAACAGATATTTTGgtaagggaatcacaactaaatcaatctaaataagcttatgtcaacaaaacccaggagatccattgttt--tttgaaatcttttgtgctctaag---------------------------------
||  |||||||| ||||||||| ||||||||| ||||| ||||| ||| |||| ||||| || ||||||||||||  |||||||||| | |||||||||     |   ||  |  || || |     |  ||    |||||| | |  | |    |  |||  ||| | ||  || |||   ||                                   
GATCTTCCATCAGCAGATGCAAACCAAATTGCCAACAATCTCTCCAACTTGGGTCAAATCTATAACAGAGAAGACCCTTCAACAGATGTCTTGgtaaggatgaaaaccctttaataagcttatagtaccaattcgtacaaaagcaaatacaattgtgttttagttttatatgcttagtgagttacatatctaaatttttcctttgatttctaacacaag