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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTCAACAGCTTTGAACGCGACTCGAGCAGGCGGCAAAGTTTGCCTTGTGGGTTTGGCCCAGAGTGAGATGACTGTTCCTCTCACTCCAGCTGCTGCCAGgtatttgatctatgatttctctgtttgtcaactacattcatgaagttgcagaattgttggttttcttttccttctctgttccattaataaactaaccata...

Basic information

species Vitis vinifera
transcript Vv16s0100g00290.t01
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110401034|gb|EC967627.1|EC967627
EST:     GGTTTGGCCCAGAGTGAGATGACTGTTCCTCTCACTCCAGCTGCTGCCAG                         GGAGGTCGATATTGTTGGCATATTCCGCTATAGGAACACATGGCCGCTCTG
genomic: GGTTTGGCCCAGAGTGAGATGACTGTTCCTCTCACTCCAGCTGCTGCCAGgtatttgatc ... ggggcaacagGGAGGTCGATATCGTTGGCATATTCCGCTATAGGAACACATGGCCGCTCTG
EST: gi|110702886|gb|EE079247.1|EE079247
EST:     GGTTTGGCCCAGAGTGAGATGACTGTTCCTCTCACTCCAGCTGCTGCCAG                         GGAAGTCGATATCGTTGGCATATTCCGCTATAGGTACACATGGCCGCTCTG
genomic: GGTTTGGCCCAGAGTGAGATGACTGTTCCTCTCACTCCAGCTGCTGCCAGgtatttgatc ... ggggcaacagGGAGGTCGATATCGTTGGCATATTCCGCTATAGGAACACATGGCCGCTCTG
EST: gi|37190683|gb|CF610032.1|CF610032
EST:     GGTTTGGCCCAGAGTGAGATGACTGTTCCTCTCACTCCAGCTGCTGCCAG                         GGAGGTCGATATCGTTGGCATATTCCGCTATAGGAACACATGGCCGCTCTG
genomic: GGTTTGGCCCAGAGTGAGATGACTGTTCCTCTCACTCCAGCTGCTGCCAGgtatttgatc ... ggggcaacagGGAGGTCGATATCGTTGGCATATTCCGCTATAGGAACACATGGCCGCTCTG
EST: gi|37190343|gb|CF609692.1|CF609692
EST:     GGTTTGGCCCAGAGTGAGATGACTGTTCCTCTCACTCCAGCTGCTGCCAG                         GGAGGTCGATATCGTTGGCATATTCCGCTATAGGAACACATGGCCGCTCTG
genomic: GGTTTGGCCCAGAGTGAGATGACTGTTCCTCTCACTCCAGCTGCTGCCAGgtatttgatc ... ggggcaacagGGAGGTCGATATCGTTGGCATATTCCGCTATAGGAACACATGGCCGCTCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTCAACAGCTTTGAACGCGACTCGAGCAGGCGGCAAAGTTTGCCTTGTGGGTTTGGCCCAGAGTGAGATGACTGTTCCTCTCACTCCAGCTGCTGCCAGgtatttgatctatgatttctctgtttgtcaactacattcatgaagttgcagaattgttggttttcttttccttctctgttccattaataaactaaccata

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaactaa