1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTCTTTGAAGGTGAAAGGAGTCTCACAAAGGACTGCAGGGAGCTTGGAAAGTTTGATTTATCAGGAATTGCCCCAGCACCAAGgttatccctcatgcctttggtctctgttctatctaatcatgtttctcctatcaaatttgtgtttgcttactgaccaggatcaacttgtttgtttggacag
species | Vitis vinifera |
transcript | Vv16s0098g01580.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TGCAGGGAGCTTGGAAAGTTCGATTTATCAGGAATTGCCCCAGCACCAAG AGGGACCCCTCAAATTGAAGTCACGTTTGAGGTTGATGCCAATGGCATTCTEST: gi|33402771|gb|CF208398.1|CF208398
genomic: TGCAGGGAGCTTGGAAAGTTTGATTTATCAGGAATTGCCCCAGCACCAAGgttatccctc ... gtttggacagAGGGACCCCTCAAATTGAAGTCACGTTTGAGGTTGATGCCAATGGCATTCT
EST: TGCAGGGAGCTTGGAAAGTTCGATTTATCAGGAATTGCCCCAGCACCAAG AGGGACCCCTCAAATTGAAGTCACGTTTGAGGTTGATGCCAATGGCATTCTEST: gi|33402884|gb|CF208511.1|CF208511
genomic: TGCAGGGAGCTTGGAAAGTTTGATTTATCAGGAATTGCCCCAGCACCAAGgttatccctc ... gtttggacagAGGGACCCCTCAAATTGAAGTCACGTTTGAGGTTGATGCCAATGGCATTCT
EST: TGCAGGGAGCTTGGAAAGTTCGATTTATCAGGAATTGCCCCAGCACCAAG AGGGACCCCTCAAATTGAAGTCACGTTTGAGGTTGATGCCAATGGCATTCTEST: gi|33402798|gb|CF208425.1|CF208425
genomic: TGCAGGGAGCTTGGAAAGTTTGATTTATCAGGAATTGCCCCAGCACCAAGgttatccctc ... gtttggacagAGGGACCCCTCAAATTGAAGTCACGTTTGAGGTTGATGCCAATGGCATTCT
EST: TGCAGGGAGCTTGGAAAGTTCGATTTATCAGGAATTGCCCCAGCACCAAG AGGGACCCCTCAAATTGAAGTCACGTTTGAGGTTGATGCCAATGGCATTCT
genomic: TGCAGGGAGCTTGGAAAGTTTGATTTATCAGGAATTGCCCCAGCACCAAGgttatccctc ... gtttggacagAGGGACCCCTCAAATTGAAGTCACGTTTGAGGTTGATGCCAATGGCATTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTTTGAAGGTGAAAGGAGTCTCACAAAGGACTGCAGGGAGCTTGGAAAGTTTGATTTATCAGGAATTGCCCCAGCACCAAGgttatccctcatgcctttggtctctgttctatctaatcatgtttctcctatcaaatttgtgtttgcttactgaccaggatcaacttgtttgtttggacag
- - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - GAGCTT