1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGAAACCAGAGGTGTTGACGAACAGAATCTACTCATTAATCTTCCCAAGGACCTTAGAAGGGACATAAAACGCCATCTCTGCTTGGCTCTGCTCAGGAGAgtgagttcacctacccttttctagaattgctcttactattatttgcccttcaagtgaatgagaatatctatataatttctgaattagcgagatatgcatt...
species | Vitis vinifera |
transcript | Vv16s0050g02560.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ACCTTAGAAGGGACATAAAACGCCATCTCTGCTTGGCTCTGCTCAGGAGA GTGCCAATGTTCGAAAAGATGGATGAGCAACTGATGGATGCAATGTGTGACEST: gi|110416312|gb|EC982283.1|EC982283
genomic: ACCTTAGAAGGGACATAAAACGCCATCTCTGCTTGGCTCTGCTCAGGAGAgtgagttcac ... cattgttaagGTGCCAATGTTCGAAAAGATGGATGAGCAACTGATGGATGCAATGTGTGAC
EST: ACCTTAGAAGGGACATAAAACGCCATCTCTGCTTGGCTCTGCTCAGGAGA GTGCCAATGTTCGAAAAGATGGATGAGCAACTGATGGATGCAATGTGTGAC
genomic: ACCTTAGAAGGGACATAAAACGCCATCTCTGCTTGGCTCTGCTCAGGAGAgtgagttcac ... cattgttaagGTGCCAATGTTCGAAAAGATGGATGAGCAACTGATGGATGCAATGTGTGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAAACCAGAGGTGTTGACGAACAGAATCTACTCATTAATCTTCCCAAGGACCTTAGAAGGGACATAAAACGCCATCTCTGCTTGGCTCTGCTCAGGAGAgtgagttcacctacccttttctagaattgctcttactattatttgcccttcaagtgaatgagaatatctatataatttctgaattagcgagatatgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccttttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagtgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagaata