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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAATTGAAATCCGACTTGCAAAAGCTGAAGAAATTCATTGGACTTCTCTTGAATTCAGCAAGGAAAATACAGTTCCACAGAGGATAAATGTATCTACAAgtaagttgttaggcttgtaaactgcccttcttttaatccacccagagattgagcaggagaagatttaattaccaccccccaccccaagttgcttccaaat...

Basic information

species Vitis vinifera
transcript Vv16s0050g01510.t01
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110421124|gb|EC987412.1|EC987412
EST:     TGAATTCAGCAAGGAAAATACAGTTCCACAGAGGATAAATGTATCTACAATTGCA                     
genomic: TGAATTCAGCAAGGAAAATACAGTTCCACAGAGGATAAATGTATCTAC-A----Agtaagttgtt ... caagtt
EST: gi|110421124|gb|EC987412.1|EC987412
EST:     TGAATTCAGCAAGGAAAATACAGTTCCACAGAGGATAAATGTATCTACAATTGCA                     
genomic: TGAATTCAGCAAGGAAAATACAGTTCCACAGAGGATAAATGTATCTAC-A----Agtaagttgtt ... caagtt
EST: gi|110421576|gb|EC987874.1|EC987874
EST:     TGAATTCAGCAAGGAAAATACAGTTCCACAGAGGATAAATGTATCTACAATTGCA                     
genomic: TGAATTCAGCAAGGAAAATACAGTTCCACAGAGGATAAATGTATCTAC-A----Agtaagttgtt ... caagtt
EST: gi|110421576|gb|EC987874.1|EC987874
EST:     TGAATTCAGCAAGGAAAATACAGTTCCACAGAGGATAAATGTATCTACAATTGCA                     
genomic: TGAATTCAGCAAGGAAAATACAGTTCCACAGAGGATAAATGTATCTAC-A----Agtaagttgtt ... caagtt
EST: gi|110686508|gb|EE064228.1|EE064228
EST:     TGAATTCAGCAAGGAAAATACAGTTCCACAGAGGATAAATGTATCTACAA                         T
genomic: TGAATTCAGCAAGGAAAATACAGTTCCACAGAGGATAAATGTATCTACAAgtaagttgtt ... caagttgcag-
EST: gi|110686508|gb|EE064228.1|EE064228
EST:     TGAATTCAGCAAGGAAAATACAGTTCCACAGAGGATAAATGTATCTACAA                         T
genomic: TGAATTCAGCAAGGAAAATACAGTTCCACAGAGGATAAATGTATCTACAAgtaagttgtt ... caagttgcag-
EST: gi|110686508|gb|EE064228.1|EE064228
EST:     TGAATTCAGCAAGGAAAATACAGTTCCACAGAGGATAAATGTATCTACAA                         T
genomic: TGAATTCAGCAAGGAAAATACAGTTCCACAGAGGATAAATGTATCTACAAgtaagttgtt ... caagttgcag-
EST: gi|32271506|gb|CD720665.1|CD720665
EST:     TGAATTCAGCAAGGAAAATACAGTTCCACAGAGGATAAATGTATCTACNA                         GTGTTGCATCTCANAGGCCCACTTACCCGTCCTCTA
genomic: TGAATTCAGCAAGGAAAATACAGTTCCACAGAGGATAAATGTATCTACAAgtaagttgtt ... caagttgcagGTGTTGCATCTCAAAGGCCCACTTACCCGTCCTCTA
EST: gi|110364112|gb|EC927758.1|EC927758
EST:     TGAATTCAGCAAGGAAAATACAGTTCCACAGAGGATAAATGTATCTACAATTGCA                     
genomic: TGAATTCAGCAAGGAAAATACAGTTCCACAGAGGATAAATGTATCTAC-A----Agtaagttgtt ... caagtt
EST: gi|110364112|gb|EC927758.1|EC927758
EST:     TGAATTCAGCAAGGAAAATACAGTTCCACAGAGGATAAATGTATCTACAATTGCA                     
genomic: TGAATTCAGCAAGGAAAATACAGTTCCACAGAGGATAAATGTATCTAC-A----Agtaagttgtt ... caagtt
EST: gi|77581747|gb|DV219826.1|DV219826
EST:     TGAATTCAGCAAGGAAAATACAGTTCCACAGAGGATAAATGTATCTACAA                         T
genomic: TGAATTCAGCAAGGAAAATACAGTTCCACAGAGGATAAATGTATCTACAAgtaagttgtt ... caagttgcag-
EST: gi|77581747|gb|DV219826.1|DV219826
EST:     TGAATTCAGCAAGGAAAATACAGTTCCACAGAGGATAAATGTATCTACAA                         T
genomic: TGAATTCAGCAAGGAAAATACAGTTCCACAGAGGATAAATGTATCTACAAgtaagttgtt ... caagttgcag-
EST: gi|77581747|gb|DV219826.1|DV219826
EST:     TGAATTCAGCAAGGAAAATACAGTTCCACAGAGGATAAATGTATCTACAA                         T
genomic: TGAATTCAGCAAGGAAAATACAGTTCCACAGAGGATAAATGTATCTACAAgtaagttgtt ... caagttgcag-
EST: gi|30329189|gb|CD012451.1|CD012451
EST:     TGAATTCAGCAAGGAAAATACAGTTCCACAGAGGATAAATGTATCTACAA                         GTGTTGCATCTCAAAGGCCCACTTACCCGTCCTCTAAGACTAGAATGGTAG
genomic: TGAATTCAGCAAGGAAAATACAGTTCCACAGAGGATAAATGTATCTACAAgtaagttgtt ... caagttgcagGTGTTGCATCTCAAAGGCCCACTTACCCGTCCTCTAAGACTAGAATGGTAG
EST: gi|32249238|gb|CD715057.1|CD715057
EST:     TGAATTCAGCAAGGAAAATACAGTTCCACAGAGGATAAATGTATCTACAA                         GTGTTGCATCTNCAA-GGCCCACTTACCCGTCCTCTAAGACTA
genomic: TGAATTCAGCAAGGAAAATACAGTTCCACAGAGGATAAATGTATCTACAAgtaagttgtt ... caagttgcagGTGTTGCATCT-CAAAGGCCCACTTACCCGTCCTCTAAGACTA
EST: gi|110383861|gb|EC948264.1|EC948264
EST:     TGAATTCAGCAAGGAAAATACAGTTCCACAGAGGATAAATGTATCTACAA                         GTGTTGCATCTCAAAGGCCCACTTACCCGTCCTCTAAGACTAGAATGGTAG
genomic: TGAATTCAGCAAGGAAAATACAGTTCCACAGAGGATAAATGTATCTACAAgtaagttgtt ... caagttgcagGTGTTGCATCTCAAAGGCCCACTTACCCGTCCTCTAAGACTAGAATGGTAG
EST: gi|110426741|gb|EC993160.1|EC993160
EST:     TGAATTCAGCAAGGAAAATACAGTTCCACAGAGGATAAATGTATCTACAA                         T
genomic: TGAATTCAGCAAGGAAAATACAGTTCCACAGAGGATAAATGTATCTACAAgtaagttgtt ... caagttgcag-
EST: gi|110426741|gb|EC993160.1|EC993160
EST:     TGAATTCAGCAAGGAAAATACAGTTCCACAGAGGATAAATGTATCTACAA                         T
genomic: TGAATTCAGCAAGGAAAATACAGTTCCACAGAGGATAAATGTATCTACAAgtaagttgtt ... caagttgcag-
EST: gi|110426741|gb|EC993160.1|EC993160
EST:     TGAATTCAGCAAGGAAAATACAGTTCCACAGAGGATAAATGTATCTACAA                         T
genomic: TGAATTCAGCAAGGAAAATACAGTTCCACAGAGGATAAATGTATCTACAAgtaagttgtt ... caagttgcag-

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAATTGAAATCCGACTTGCAAAAGCTGAAGAAATTCATTGGACTTCTCTTGAATTCAGCAAGGAAAATACAGTTCCACAGAGGATAAATGTATCTACAAgtaagttgttaggcttgtaaactgcccttcttttaatccacccagagattgagcaggagaagatttaattaccaccccccaccccaagttgcttccaaat

- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccaccc