Sequence
atgc intronic sequence ATGC exonic sequenceGTGTTGCTGTTGATGAGAAACCTCTCCATCAATTTGACCAGCCCTGATTTTGAGGATCATgtaagtgccattttcacatggttcttgtattcaagtttcttgatgcttaattattcatcatattgtgaaagatgcagcacctcactggtaaaattgcata...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0050g01180.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os02g45670.1 (Oryza sativa), 5'ss of exon 7
GTGTTGCTGTTGATGAGAAACCTCTCCATCAATTTGACCAGCCCTGATTTTGAGGATCATgtaagtgccattttcacatggttcttgtattcaagtttcttg-atgct-taattattcatcatattgtgaaagatgcagcacctcactggtaaaattgcata
| ||| |||| |||||||| ||||||||||||||||| || ||||||||||| ||||| ||| | | | |||| ||| | ||||| || || | || |||| | | |||||| | | | | | ||
GCATTGTTGTTAATGAGAAATCTCTCCATCAATTTGACTAGTCCTGATTTTGAAGATCAGgtacgcagctctccagcatgcctctagaattcagtttggctgtgtactgccattacttccttcaaaa-gaaagaaaaatgcctttagaatttggatcatgc-
upper sequence: Vv16s0050g01180.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G118693_T03 (Zea mays), 5'ss of exon 7
GTGTTGCTGTTGATGAGAAACCTCTCCATCAATTTGACCAGCCCTGATTTTGAGGATCATgtaagtgccattttcacatggttcttgtattcaagtttcttgatgcttaattattcatcatattgtgaaagatgcag----cacctcactggtaaaattgcata----
| | || |||||||||| || |||||||||||||||||||| ||||||||||| ||||| ||||| || ||||| |||| | | | ||| || ||| || || ||| | || | | ||| |||| || ||
GCGCTGTTGTTGATGAGGAATCTCTCCATCAATTTGACCAGTCCTGATTTTGAAGATCAAgtaagca--gttcaaacatg--tcttcagattatgcctct----actaaatcgtttgccactaattgacggttgtgtatttcgacccaccagtaatgttttctatagg
upper sequence: Vv16s0050g01180.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM5G833032_T03 (Zea mays), 5'ss of exon 6
GTGTTGCTGTTGATGAGAAACCTCTCCATCAATTTGACCAGCCCTGATTTTGAGGATCATgtaagtgccattttcacatggttcttgtattcaagtttcttgatgcttaattattcatcat--attgtgaaagatgca--gcacctcactggtaaaattgcata------
| || |||||||||| || |||||||||||||| ||||| ||||||||||| ||||| |||||| || ||||| || ||| | | ||| || |||| || || |||| | || | | | |||| |||| |||||
GCACTGTTGTTGATGAGGAATCTCTCCATCAATTTAACCAGTCCTGATTTTGAAGATCAAgtaagta--gttcaaacatg-ccctcagatt-atgcctct----actaaattgtttgccactaattgatgattgtgtatttcgacccactagtaa--ttgcaatgttttc
upper sequence: Vv16s0050g01180.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM5G833032_T01 (Zea mays), 5'ss of exon 7
GTGTTGCTGTTGATGAGAAACCTCTCCATCAATTTGACCAGCCCTGATTTTGAGGATCATgtaagtgccattttcacatggttcttgtattcaagtttcttgatgcttaattattcatcat--attgtgaaagatgcag--cacctcactggtaaaattgcata-----------
| || |||||||||| || |||||||||||||| ||||| ||||||||||| ||||| |||||| || ||||| || ||| | | ||| || |||| || || |||| | || | | | |||| |||| |||||
GCACTGTTGTTGATGAGGAATCTCTCCATCAATTTAACCAGTCCTGATTTTGAAGATCAAgtaagta--gttcaaacatg-ccctcagatt-atgcctct----actaaattgtttgccactaattgatgattgtgtatttcgacccactagtaa--ttgcaatgttttctttag
upper sequence: Vv16s0050g01180.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA16G29740.1 (Glycine max), 5'ss of exon 7
GTGTTGCTGTTGATGAGAAACCTCTCCATCAATTTGACCAGCCCTGATTTTGAGGATCATgtaagtgccattttcacatggttcttgtattcaagtttcttgatgcttaattattcatcatattgtgaaagatgcagcacctcactggtaaaattgcata-------
||| | ||||| ||||||||||| ||||||||||| || ||||| ||||||||||||||||||||| | | ||| || | || ||| | | ||| || |||| | | || || |||||| | || | || ||
GTGCTACTGTTAATGAGAAACCTGTCCATCAATTTAACTAGCCCAGATTTTGAGGATCATgtaagtattaatg-cac-tgatctttagattg----ctataaatgtctagcatgtcatattgtcatgctgtata-agcaccataagagttcattttggtaaagtgcc
upper sequence: Vv16s0050g01180.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA09G24400.1 (Glycine max), 5'ss of exon 7
GTGTTGCTGTTGATGAGAAACCTCTCCATCAATTTGACCAGCCCTGATTTTGAGGATCATgtaagtgccattttcacatggttcttgtattcaagtttcttgatgcttaattatt-catcatattgtgaaagatgcagcacctcactggtaaaattgcata---------
||| | ||||| ||||||||||| ||||||||||| || ||||| ||||||||| ||||||||||| |||| | ||| || | || || || || || |||| || | || | || | | | | ||| |
GTGCTACTGTTAATGAGAAACCTGTCCATCAATTTAACTAGCCCAGATTTTGAGCATCATgtaagta-----ttcat---gctctgacctttagattgct--ataaatatctagcatgtcatgctgagtaattgcctgccctgtataagcaccattagagttcattttgg
upper sequence: Vv16s0050g01180.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA20G30250.1 (Glycine max), 5'ss of exon 7
GTGTTGCTGTTGATGAGAAACCTCTCCATCAATTTGACCAGCCCTGATTTTGAGGATCATgtaagtgccattttcacatggttcttgtatt-caagtttcttg---atgcttaattattcat-catattgtgaaagatgcagcacctcactggtaaaattgcata
||| | |||||||||||||||| || |||||||| | ||||| ||||||||||| ||||||||| || ||| | | | ||||||| | | | | || || ||||||| || || || | | | | | | | ||
GTGCTATTGTTGATGAGAAACCTGTCTATCAATTTAGCAAGCCCAGATTTTGAGGACCATgtaagtattcttgtca-acgatctttgtattactattattatgaacatatataattatgaatgcaccttatttactacttga-gctttgcccctctttttaa---
upper sequence: Vv16s0050g01180.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT5G52660.2 (Arabidopsis thaliana), 5'ss of exon 7
GTGTTGCTGTTGATGAGAAACCTCTCCATCAATTTGACCAGCCCTGATTTTGAGGATCATgtaagtgccattttcacatggttcttgtattcaagttt--cttgatgcttaattattcatcatattgtgaaagatgcagc-acctcactggtaaaattgcata
||||| || ||||||||||| || |||||||| ||| | || ||||| |||||||||||||||||| | || || || || |||| ||| || || | || | | | | | | | ||| || |
GTGTTACTATTGATGAGAAATCTATCCATCAACTTGTCTAGTCCTGACTTTGAGGATCATgtaagtattttactc-cacaaa-ctactagtcaattttaactcgaaaccctataccagaactaacctcaagactcttattgatttcaaaaacaatag------
upper sequence: Vv16s0050g01180.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: PP1S46_272V6.1 (Physcomitrella patens), 5'ss of exon 6
GTGTTGCTGTTGATGAGAAACCTCTCCATCAATTTGACCAGCCCTGATTTTGAGGATCATgtaagtgcca-ttttcacatggttcttgtattcaagtttcttgatgcttaattattcatcatattgtgaaagat-gcagcacctcactggtaaaattgcata
|| | || |||||| | |||||||||||||| || |||||||||| ||||| || ||||||||| ||| | || || | | | | || | || | | ||| | | ||| |||||| | ||||| | | |||
GTTCTACTTTTGATGCGTAACCTCTCCATCAACCTGGCCAGCCCTGACTTTGAAGAACATgtaagtaccagtcttaacgtagctttaatagaaatattcccggtaacttcacatgttgaatcattctgaaaggttgcagctttttgaaatccttttggca--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32269462|gb|CD718621.1|CD718621EST: TGATGAGAAACCTCTCCATCAATTTGACCAGCCCTGATTTTGAGGATCAT AGAAAATTGCTTTCAACCTATGAGATCGACTCAGAGACAACTAATCATGGT
genomic: TGATGAGAAACCTCTCCATCAATTTGACCAGCCCTGATTTTGAGGATCATgtaagtgcca ... gttgatgcagAGAAAATTGCTTTCAACCTATGAGATCGACTCAGAGACAACTAGCCATGGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGTTGCTGTTGATGAGAAACCTCTCCATCAATTTGACCAGCCCTGATTTTGAGGATCATgtaagtgccattttcacatggttcttgtattcaagtttcttgatgcttaattattcatcatattgtgaaagatgcagcacctcactggtaaaattgcata
- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtaaaa