1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GACATCATGGGCAGTCAGCACCCGTTTTATTGGTGGTATCATCATGACCCATGGAGATGATGCTGGTTTGATGCTTCCCCCAAAAATTGCTCCAATACAGgtattacttactatctgatcagtgttgttagatccagtttatatacattccaattagagactgctccaagttttgcttcttgccatatggtacttggagattataactcattgttttagttctgcatttttttgttcttaatgcttgttgatttgacaattttatattttaacacctattgcatttttccag
species | Vitis vinifera |
transcript | Vv16s0050g00960.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ATGGAGATGATGCTGGTTTGATGCTTCCCCCAAAAATTGCTCCAATACAG GTGGTAATCATACCAATCTGGAAGAAAGCTGATGAAAAAACAGGAGTTCTCEST: gi|351023829|gb|FQ448380.1|FQ448380
genomic: ATGGAGATGATGCTGGTTTGATGCTTCCCCCAAAAATTGCTCCAATACAGgtattactta ... atttttccagGTGGTAATCATACCAATCTGGAAGAAGGCTGATGAAAAAACAGGAGTTCTC
EST: ATGGAGATGATGCTGGTTTGATGCTTCCCCCAAAAATTGCTCCAATACAG GTGGTAATCATACCAATCTGGAAGAAGGCTGATGAAAAAACAGGAGTTCTCEST: gi|351033120|gb|FQ446473.1|FQ446473
genomic: ATGGAGATGATGCTGGTTTGATGCTTCCCCCAAAAATTGCTCCAATACAGgtattactta ... atttttccagGTGGTAATCATACCAATCTGGAAGAAGGCTGATGAAAAAACAGGAGTTCTC
EST: CAAAAATTGCTCCAATACAG GTGGTAATCATACCAATCTGGAAGAAGGCTGATGAAAAAACAGGAGTTCTCEST: gi|27586757|gb|CB009452.1|CB009452
genomic: CAAAAATTGCTCCAATACAGgtattactta ... atttttccagGTGGTAATCATACCAATCTGGAAGAAGGCTGATGAAAAAACAGGAGTTCTC
EST: ATGGAGATGATGCTGGTTTGATGCTTCCCCCAAAAATTGCTCCAATACAG GTGGTAATCATACCAATCTGGAAGAAGGCTGATGAAAAAACAGGAGTTCTC
genomic: ATGGAGATGATGCTGGTTTGATGCTTCCCCCAAAAATTGCTCCAATACAGgtattactta ... atttttccagGTGGTAATCATACCAATCTGGAAGAAGGCTGATGAAAAAACAGGAGTTCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACATCATGGGCAGTCAGCACCCGTTTTATTGGTGGTATCATCATGACCCATGGAGATGATGCTGGTTTGATGCTTCCCCCAAAAATTGCTCCAATACAGgtattacttactatctgatcagtgttgttagatccagtttatatacattccaattagagactgctccaagttttgcttcttgccatatggtacttggagattataactcattgttttagttctgcatttttttgttcttaatgcttgttgatttgacaattttatattttaacacctattgcatttttccag
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG