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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCACTGGGCAGTCATGTCCTTTATCATTCAAGGGAAGCCCATACTGGATGGCACCTGAGgtcagaatgttttttcttgccataaccttatctcttcatttatgacaagcttttgatagtatttcttacttctctgttcagttgttcgctcag

Basic information

species Vitis vinifera
transcript Vv16s0050g00770.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g00770.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G093316_T01 (Zea mays), 5'ss of exon 8
ATCACTGGGCAGTCATGTCCTTTATCATTCAAGGGAAGCCCATACTGGATGGCACCTGAGgtcagaatgttttttcttgccataaccttatctcttcatttat---gacaagcttttgatagtatttcttacttctctgttcagttgttcgctcag
|||| |||||||   || ||||| ||||| ||||| ||||||||||||||||| |||||||| |  |       |||||| ||     |    ||| | ||||   | | || |||  |||   |  | |     | ||||  |         |||
ATCAATGGGCAGCAGTGCCCTTTCTCATTTAAGGGTAGCCCATACTGGATGGCTCCTGAGgt-attaccccaaatcttgc-attgttctgctactttagttattttggccagatttatatatcctgacctttgcttatgttgtgacaaatatgcag

upper sequence: Vv16s0050g00770.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA16G30030.2 (Glycine max), 5'ss of exon 8
ATCACTGGGCAGTCATGTCCTTTATCATTCAAGGGAAGCCCATACTGGATGGCACCTGAGgtcagaatgttttttct-----tgccataaccttatctcttcatttatgacaagcttttgatagtatttcttacttctctgttcagttgttcgctcag
|| || ||||| |||||||| |||||||||||||||||||| || |||||||| ||||||||   ||| |||| |||     |       | ||||   |||| |||   |  | |||||  | |  || |  |||  || |    || |||      
ATAACAGGGCAATCATGTCCATTATCATTCAAGGGAAGCCCTTATTGGATGGCTCCTGAGgttgtaatattttctctgttagttttggtcctttatagattcaattacatcttggttttgtgact--ttatagctttgctttctgatttttcag----

upper sequence: Vv16s0050g00770.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA09G24970.2 (Glycine max), 5'ss of exon 7
ATCACTGGGCAGTCATGTCCTTTATCATTCAAGGGAAGCCCATACTGGATGGCACCTGAGgtcagaatgttttttcttgccataaccttatctcttcatttatgacaagcttttgatagtatttcttacttctctgttcagttgttcgctcag
|| || ||||| |||||||| |||||||||||||||||||| || |||||||| ||||||||   ||| |||| ||| |  |    |   ||| |  |  |   |  |  | ||| |  | |  |||  |    |       || |   ||||
ATAACAGGGCAATCATGTCCATTATCATTCAAGGGAAGCCCCTATTGGATGGCTCCTGAGgttgtaatattttctct-gttactttcagttctttatagattcaattacatattggttttgtgacttgatagctttgcattctgatttttcag

upper sequence: Vv16s0050g00770.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA10G37730.1 (Glycine max), 5'ss of exon 9
ATCACTGGGCAGTCATGTCCTTTATCATTCAAGGGAAGCCCATACTGGATGGCACCTGAGgtcagaatgttttttcttgccataaccttatctcttcatttatgacaagcttttgatagtatttcttacttctctgttcagttgttcgctcag
|| || ||||| || ||||  || ||||||||||||| ||| ||||||||||| ||||||||   ||| |||| | |   | |    || | | |  |||| |||     | ||     | |   | | |    |       || |   ||||
ATAACAGGGCAATCGTGTCTATTGTCATTCAAGGGAACCCCTTACTGGATGGCTCCTGAGgttctaatattttctttaaaccttttttt-tatatatattt-tgattgcatcttagatctgtgattcagtatcattgctttctgatgattcag

upper sequence: Vv16s0050g00770.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: PP1S10_200V6.2 (Physcomitrella patens), 5'ss of exon 9
ATCACTGGGCAGTCATGTCCTTTATCATTCAAGGGAAGCCCATACTGGATGGCACCTGAGgtcagaatgttttttcttgcc-ataaccttatctcttcatttatgacaagcttttgatagtatttcttacttctctgttcagttgttcgctcag-------------------------------------------------------------------
||  |||  || || | ||     || |||||||||||||| ||||||||||| ||||||||  |  |      | |     || |   |  || || |  | | |||| | |        |  || |     | |   | ||   |  || |                                                                    
ATTTCTGCTCAATCCTTTCTCCAGTCTTTCAAGGGAAGCCCTTACTGGATGGCTCCTGAGgtatgtgtcaaacgtataattgattatgctgactgtttacatcttacaaacatactcatccaaatcgtctgcatttagccggta--ttacttaaatgcagtgatggagctgttagagattcccctcctcaattacgatttaacatgattcttaattggcag