1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGTACTAAAACGGGGAGGAAGATTCCTTTGCCTTGAGCTCAGCCATGTGGAAATTCCTGTATTTAAGGAGTTgtgagtatcactgttgcttttcacttatgcaagaactcttatgtacccaatagattgccttgccacctaggtttttgatacgagaattggctggagtgtt...
species | Vitis vinifera |
transcript | Vv16s0039g01590.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTCCTTTGCCTTGAGCTCAGCCATGTGGAAATTCCTGTATTTAAGGAGTT GTATGATTACTACTCGTTTTCAGTCATTCCAGCCATGGGGGAGCTAGTAGCEST: gi|83274635|gb|DV938731.1|DV938731
genomic: TTCCTTTGCCTTGAGCTCAGCCATGTGGAAATTCCTGTATTTAAGGAGTTgtgagtatca ... ccttttgcagGTATGATTACTACTCGTTTTCAGTCATTCCAGCCATGGGGGAGCTAGTAGC
EST: TTCCTTTGCCTTGAGCTCAGCCATGTGGAAATTCCTGTATTTAAGGAGTT GTATGATTACTACTCGTTTTCAGTCATTCCAGCCATGGGGGAGCTAGTAGCEST: gi|27580065|gb|CB002760.1|CB002760
genomic: TTCCTTTGCCTTGAGCTCAGCCATGTGGAAATTCCTGTATTTAAGGAGTTgtgagtatca ... ccttttgcagGTATGATTACTACTCGTTTTCAGTCATTCCAGCCATGGGGGAGCTAGTAGC
EST: TTCCTTTGCCTTGAGCTCAGCCATGTGGAAATTCCTGTATTTAAGGAGTT GTATGATTACTACTCGTTTTCAGTCATTCCAGCCATGGGGGAGCTAGTAGC
genomic: TTCCTTTGCCTTGAGCTCAGCCATGTGGAAATTCCTGTATTTAAGGAGTTgtgagtatca ... ccttttgcagGTATGATTACTACTCGTTTTCAGTCATTCCAGCCATGGGGGAGCTAGTAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTACTAAAACGGGGAGGAAGATTCCTTTGCCTTGAGCTCAGCCATGTGGAAATTCCTGTATTTAAGGAGTTgtgagtatcactgttgcttttcacttatgcaagaactcttatgtacccaatagattgccttgccacctaggtttttgatacgagaattggctggagtgtt
- - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acgagaa