Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGTTGCGGGGGAATTCATTGACTGGAACCTTGTCCCCTGACATGTGCCAATTAACAGGCCTGTGGTATTTgtgagtgatattacttccttgttatgctatctttgcattggtttttcaaatggatgtttgtttattgtgaaactgcatttatttgtttacattgttttcag

Basic information

species Vitis vinifera
transcript Vv16s0022g02030.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0022g02030.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os06g03970.1 (Oryza sativa), 5'ss of exon 7
TGGGTTGCGGGGGAATTCATTGACTGGAACCTTGTCCCCTGACATGTGCCAATTAACAGGCCTGTGGTATTTgtgagtgatattacttccttgttatgctatctttgcattggtttttcaaatggatgtttgtttattgtgaaactgcatttatttgtttacattgttttcag
 || ||| |||| || ||| |||||||||| ||||| ||||||||||||||| | || ||||||||||| |||| ||| || |    ||| | |   | | |   |||||   || | ||| | |    ||||| |  |||    | |  || ||  | ||||          
AGGTTTGAGGGGTAACTCACTGACTGGAACTTTGTCACCTGACATGTGCCAACTGACTGGCCTGTGGTACTTgtaagtcatctcctctccctttggagatgttgctgcat--attgtgcaacttggc-cttgttgacagtgg--ttactgttcttaatctacag---------

upper sequence: Vv16s0022g02030.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G082855_T03 (Zea mays), 5'ss of exon 7
TGGGTTGCGGGGGAATTCATTGACTGGAACCTTGTCCCCTGACATGTGCCAATTAACAGGCCTGTGGTATTTgtgagtgatattacttccttgttatgctatctttgcattggtttttcaaatggatgtttgtttattgtgaaactgcatttatttgtttacattgttttcag
 || ||| |||| || ||| |||||||||| ||||| ||||||||||||||| | || ||||||||||| |||| |||    ||||| |  || |   | ||  | |     | |    ||   |  | ||| |  |  ||| | ||       |||| | |  | | | |||
AGGCTTGAGGGGTAACTCACTGACTGGAACTTTGTCACCTGACATGTGCCAACTGACTGGCCTGTGGTACTTgtaagt----ttactacactgct---ccattgtaggtcctgatgcataagctgcagcttgatcttattgacattgg------ttgtcttccatatatgcag