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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTGGAAGACAATAGCACAGTGTGTAGATGATATTCTGAAAGACTACCCTCGTCTGCGATTAACTCATGGCCGGAAGgtaatctttggaatgatgttgtagatttttcaatatattatcttcagcttgtccttttcttttctgaaccccacttattaatgattag

Basic information

species Vitis vinifera
transcript Vv16s0022g00660.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0022g00660.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA06G47630.2 (Glycine max), 5'ss of exon 7
TATTGGAAGACAATAGCACAGTGTGTAGATGATATTCTGAAAGACTACCCTCGTCTGCGATTAACTCATGGCCGGAAGgta--atctttggaatga----tgttgtagatttttcaatatattatcttcagcttgtccttttcttttctgaaccccacttattaatgattag
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AGTTGGCAAATTGTGGGACAACATGTATATGATATTCTGAAGGAGTATCCACGTCTGCGTGTCACTCATGGCCGGAAGgtactatttctagacccaaatttatcactcgttttttaaaaag--atctaactgttaaagtactttttaataatctatgtttactaattttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30254979|gb|CB971426.1|CB971426
EST:     ATGATATTCTGAAAGACTACCCTCGTCTGCGATTAACTCATGGCCGGAAG                         GTTTTAGAGGTCCGACCTGTGATTGACTGGGATAAGGGGAAAA
genomic: ATGATATTCTGAAAGACTACCCTCGTCTGCGATTAACTCATGGCCGGAAGgtaatctttg ... taatgattagGTTTTAGAGGTCCGACCTGTGATTGACTGGGATAAGGG-AAAA