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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTACTCAGGGAAATATGACCACTCTGGTCATGGGTCAATCTAATCAAGCAGGGGCAGCATTTCCAACCTCTCAACTTGGCCTAATTCCTGTCCAAGGGgtaagatttgatagttcatttgctggctatggccatatatttcctcccatatttcatacacaactgggtttacccccaatctggagtcccaagtcagctt...

Basic information

species Vitis vinifera
transcript Vv15s0048g02540.t01
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30296940|gb|CB973734.1|CB973734
EST:     CAGGGGCAGCATTTCCAACCTCTCAACTTGGCCTAATTCCTGTCCAAGGG                         GAGAACAATTTGGAACCTATGGAGGAACTGAGTCATGGTTCTCCTGTTGCT
genomic: CAGGGGCAGCATTTCCAACCTCTCAACTTGGCCTAATTCCTGTCCAAGGGgtaagatttg ... gcatgagcagGAGAACAATTTGGAACCTATGGAGGAACTGAGTCATGGTTCTCCTGTTGCT
EST: gi|30323643|gb|CD006905.1|CD006905
EST:     CAGGGGCAGCATTTCCAACCTCTCAACTTGGCCTAATTCCTGTCCAAGGN                         GAGAACAATTTGGAACCTATGGAGGAACTGAGTCATGGTTCTCCTGTTGCT
genomic: CAGGGGCAGCATTTCCAACCTCTCAACTTGGCCTAATTCCTGTCCAAGGGgtaagatttg ... gcatgagcagGAGAACAATTTGGAACCTATGGAGGAACTGAGTCATGGTTCTCCTGTTGCT
EST: gi|110687475|gb|EE064923.1|EE064923
EST:     CAGGGGCAGCATTTCCCACCTCTCTACTTGGCCTAATTCCTGTTCAAGGG                         GAGAACTATTTGNAACCTATGGAGGA
genomic: CAGGGGCAGCATTTCCAACCTCTCAACTTGGCCTAATTCCTGTCCAAGGGgtaagatttg ... gcatgagcagGAGAACAATTTGGAACCTATGGAGGA
EST: gi|30325922|gb|CD009184.1|CD009184
EST:     CAGGGGCAGCATTTCCAACCTCTCAACTTGGCCTAATTCCTGTCCAAGGG                         GAGAACAATTTGGAACCTATGGAGGAACTGAGTCATGGTTCTCCTGTTGCT
genomic: CAGGGGCAGCATTTCCAACCTCTCAACTTGGCCTAATTCCTGTCCAAGGGgtaagatttg ... gcatgagcagGAGAACAATTTGGAACCTATGGAGGAACTGAGTCATGGTTCTCCTGTTGCT
EST: gi|32247880|gb|CD713699.1|CD713699
EST:     CAGGGGCAGCATTTCCAACCTCTCAACTTGGCCTAATTCCTGTCCAAGGG                         GAGAACAATTTGGAACCTATGGAGGAACTGAGTCATGGTTCTCCTGTTGCT
genomic: CAGGGGCAGCATTTCCAACCTCTCAACTTGGCCTAATTCCTGTCCAAGGGgtaagatttg ... gcatgagcagGAGAACAATTTGGAACCTATGGAGGAACTGAGTCATGGTTCTCCTGTTGCT
EST: gi|34546174|gb|CF514406.1|CF514406
EST:     CAGGGGCAGCATTTCCAACCTCTCAACTTGGCCTAATTCCTGTCCAAGGG                         GAGAACAATTTGGAACCTATGGAGGAACTGAGTCATGGTTCTCCTGTTGCT
genomic: CAGGGGCAGCATTTCCAACCTCTCAACTTGGCCTAATTCCTGTCCAAGGGgtaagatttg ... gcatgagcagGAGAACAATTTGGAACCTATGGAGGAACTGAGTCATGGTTCTCCTGTTGCT
EST: gi|30327031|gb|CD010293.1|CD010293
EST:     CAGGGGCAGCATTTCCAACCTCTCAACTTGGCCTAATTCCTGTCCAAGGG                         GAGAACAATTTGGAACCTATGGAGGAACTGAGTCATGGTTCTCCTGTTGCT
genomic: CAGGGGCAGCATTTCCAACCTCTCAACTTGGCCTAATTCCTGTCCAAGGGgtaagatttg ... gcatgagcagGAGAACAATTTGGAACCTATGGAGGAACTGAGTCATGGTTCTCCTGTTGCT
EST: gi|34545179|gb|CF513411.1|CF513411
EST:     CAACTTGGCCTAATTCCTGTCCAAGGG                         GAGAACAATTTGGAACCTATGGAGGAACTGAGTCATGGTTCTCCTGTTGCT
genomic: CAACTTGGCCTAATTCCTGTCCAAGGGgtaagatttg ... gcatgagcagGAGAACAATTTGGAACCTATGGAGGAACTGAGTCATGGTTCTCCTGTTGCT
EST: gi|32271922|gb|CD721081.1|CD721081
EST:     CAGGGGCAGCATTTCCAACCTCTCAACTTGGCCTAATTCCTGTCCAAGGG                         GAGAACAATTTGGAACCTATGGAGGAACTGAGTCATGGTTCTCCTGTTGCT
genomic: CAGGGGCAGCATTTCCAACCTCTCAACTTGGCCTAATTCCTGTCCAAGGGgtaagatttg ... gcatgagcagGAGAACAATTTGGAACCTATGGAGGAACTGAGTCATGGTTCTCCTGTTGCT
EST: gi|32248937|gb|CD714756.1|CD714756
EST:     CAGGGGCAGCATTTCCAACCTCTCAACTTGGCCTAATTCCTGTCCAAGGG                         GAGAACAATTTGGAACCTATGGAGGAACTGAGTCATGGTTCTCCTGTTGCT
genomic: CAGGGGCAGCATTTCCAACCTCTCAACTTGGCCTAATTCCTGTCCAAGGGgtaagatttg ... gcatgagcagGAGAACAATTTGGAACCTATGGAGGAACTGAGTCATGGTTCTCCTGTTGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTTACTCAGGGAAATATGACCACTCTGGTCATGGGTCAATCTAATCAAGCAGGGGCAGCATTTCCAACCTCTCAACTTGGCCTAATTCCTGTCCAAGGGgtaagatttgatagttcatttgctggctatggccatatatttcctcccatatttcatacacaactgggtttacccccaatctggagtcccaagtcagctt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccccaa