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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAATCTCATGGAAGGGAAAAAATCCTTGTTGCAACCAAAAACTTTTGGAAGCTACCTTCTGCATCCCATTGACATAGCCTCCTGTTCTTTGTAATGTAGgtatttcccccatctcatctttttttcacctttatttaaagccaaggtttcatctccatgcatcaaacgatgcaattccctctgttatttatatctttattttgatttttcttgtag

Basic information

species Vitis vinifera
transcript Vv15s0048g01990.t01
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110686679|gb|EE064591.1|EE064591
EST:     AGCTACCTTCTGCATCCCATTGACATAGCCTCCTGTTCTTTGTAAT-TA-                         -A-GAGATAAGTGGGATCAGAGTGGAGGAGGAAAAGGTATATAAAACTGGA
genomic: AGCTACCTTCTGCATCCCATTGACATAGCCTCCTGTTCTTTGTAATGTAGgtatttcccc ... tttcttgtagTAAGAGATAAGTGGGATCAGAGTG-AGGAGGAAAAGGTACATAAAACTGGA
EST: gi|30300158|gb|CB976952.1|CB976952
EST:     AGCTCCCTTCTGCATCCCATTGACATAGCCTCCTGTTCTTTGTGAT-TA-                         -A-GAGATAAGTGGGATCAGAGTGAGGAGGAAAAGGTACATAAAACTGGAA
genomic: AGCTACCTTCTGCATCCCATTGACATAGCCTCCTGTTCTTTGTAATGTAGgtatttcccc ... tttcttgtagTAAGAGATAAGTGGGATCAGAGTGAGGAGGAAAAGGTACATAAAACTGGAA
EST: gi|110425458|gb|EC991843.1|EC991843
EST:     AGCTACCTTCTGCATCCCATTGACATAGCCTCCTGTTCTTTGTAAT-TA-                         -A-GAGATAAGTGGGATCAGAGTGGAGGAGGAAAAGGTATATAAAACTGGA
genomic: AGCTACCTTCTGCATCCCATTGACATAGCCTCCTGTTCTTTGTAATGTAGgtatttcccc ... tttcttgtagTAAGAGATAAGTGGGATCAGAGTG-AGGAGGAAAAGGTACATAAAACTGGA
EST: gi|34544982|gb|CF513214.1|CF513214
EST:     AGCTACCTTCTGCATCCCATTGACATAGCCTCCTGTTCTTTGTAAT-TA-                         -A-GAGATAAGTGGGATCAGAGTGAGGAGGAAAAGGTACATAAAACTGGAA
genomic: AGCTACCTTCTGCATCCCATTGACATAGCCTCCTGTTCTTTGTAATGTAGgtatttcccc ... tttcttgtagTAAGAGATAAGTGGGATCAGAGTGAGGAGGAAAAGGTACATAAAACTGGAA
EST: gi|30300088|gb|CB976882.1|CB976882
EST:     AGCTACCTTCTGCATCCCATTGACATAGCCTCCTGTTCTTTGTGAT-TA-                         -A-GAGATAAGTGGGATCAGAGTGAGGAGGAAAAGGTACATAAAACTGGAA
genomic: AGCTACCTTCTGCATCCCATTGACATAGCCTCCTGTTCTTTGTAATGTAGgtatttcccc ... tttcttgtagTAAGAGATAAGTGGGATCAGAGTGAGGAGGAAAAGGTACATAAAACTGGAA
EST: gi|34364124|gb|CF405709.1|CF405709
EST:     AGCTACCTTCTGCATCCCATTGACATAGCCTCCTGTTCTTTGTAA--T--                         TAAGAGATAAGTGGGATCAGAGTGAGGAGGAAAAGGTACATAAAACTGGAA
genomic: AGCTACCTTCTGCATCCCATTGACATAGCCTCCTGTTCTTTGTAATGTAGgtatttcccc ... tttcttgtagTAAGAGATAAGTGGGATCAGAGTGAGGAGGAAAAGGTACATAAAACTGGAA
EST: gi|34545974|gb|CF514206.1|CF514206
EST:     AGCTACCTTCTGCATCCCATTGACATAGCCTCCTGTTCTTTGTAAT-TA-                         -A-GAGATAAGTGGGATCAGAGTGAGGAGGAAAAGGTACATAAAACTGGAA
genomic: AGCTACCTTCTGCATCCCATTGACATAGCCTCCTGTTCTTTGTAATGTAGgtatttcccc ... tttcttgtagTAAGAGATAAGTGGGATCAGAGTGAGGAGGAAAAGGTACATAAAACTGGAA