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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAAGACTTGAAAGCACACAGAAGGTGTTGGAACCTGTTCCTATTATTGGATTTCTCACAGgtgtgcttacaatattctatactgttgaagttctcttgtgattttatcatgtttatttccagttaatttgactaatttattcaaaaaccctttctctaatcttcttttcaattaaatcttcttcccattgtgttatttgtatttccttctattagattaatttatcaaaaaaaatcttgcctcttttgcatgtgcag

Basic information

species Vitis vinifera
transcript Vv15s0048g01140.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0048g01140.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA07G08700.1 (Glycine max), 5'ss of exon 7
GCAAAGACTTGAAAGCACACAGAAGGTGTTGGAACCTGTTCCTATTATTGGATTTCTCACAGgtgtgcttacaa--tattctatactgttgaagttctcttgtgattttatcatgtttatttccagttaatttgactaatttattcaaaaaccctttctctaatcttcttttcaattaaatcttcttcccattgtgttatttgtatttccttctattagattaatttatcaaaaaaaatcttgcctcttttgcatgtgcag
||||||||||||||||||  |||| || ||||| ||| ||||| | || |||||||||||||||| |||||  |  ||||   | |  ||  ||| | |||    | || ||||  | |||||     |  || |  ||||  |  ||  |       ||| ||||  ||||| | | ||| ||                                                                             
GCAAAGACTTGAAAGCACGGAGAAAGTTTTGGAGCCTATTCCTGTCATAGGATTTCTCACAGgtgagcttaatacttatttgtttcccttttagtgc-cttaccttcttgtcatcatcatttc-----agcttcataaattactctaagca-------tctgatctgtttttctaatgaatgttacag-------------------------------------------------------------------------

upper sequence: Vv15s0048g01140.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA03G02080.1 (Glycine max), 5'ss of exon 7
GCAAAGACTTGAAAGCACACAGAAGGTGTTGGAACCTGTTCCTATTATTGGATTTCTCACAGgtgtgcttacaatattctatactgttgaagttctcttgtgat--tttatcatgtt--tatttccagtt-aatttgactaatttattcaaaaaccctttctctaatcttcttttcaattaaatcttcttcccattgtgttatttgtatttccttctattagattaatttatcaaaaaaaatcttgcctcttttgcatgtgcag
||||||||||||||||||  |||| || ||||||||| | ||| | || |||||||||||||||| ||||   |  |  |    || |    ||| ||| |  |   |||   | ||   ||   || || |  ||||   | |  || ||  |       ||| ||||  ||||| | |  || ||                                                                             
GCAAAGACTTGAAAGCACTGAGAAAGTTTTGGAACCTATACCTGTCATGGGATTTCTCACAGgtgagcttcatacttatttgtttgctttgtttcccttttagtgccttactttcttgtcatcatcatttcagcttgatagactactttaagca-------tctgatctgtttttccaatgtatgttacag-------------------------------------------------------------------------

upper sequence: Vv15s0048g01140.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA04G18680.1 (Glycine max), 5'ss of exon 5
GCAAAGACTTGAAAGCACACAGAAGGTGTTGGAACCTGTTCCTATTATTGGATTTCTCACAGgtgtgcttacaa--tattctatactgttgaagttctcttgtgattttatcatgtttatttccagttaatttgactaatttattcaaaaaccctttctctaatcttcttttcaattaaatcttcttcccattgtgttatttgtatttccttctattagattaatttatcaaaaaaaatcttgcctcttttgcatgtgcag
||||||| ||||||||||  |||| || ||||| ||| ||||| | || |||||||||||||||| |||||  |  ||||   | |  ||  ||| | |||    | || ||||  | |||||     |  || |  ||||  |  ||  |       ||| ||||  ||||| | | ||| ||                                                                             
GCAAAGAATTGAAAGCACGGAGAAAGTTTTGGAGCCTATTCCTGTCATAGGATTTCTCACAGgtgagcttaatacttatttgtttcccttttagtgc-cttaccttcttttcatcatcatttc-----agcttcataaattactctaagca-------tctgatctatttttctaatgaatgttacag-------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110372309|gb|EC936464.1|EC936464
EST:     AAGCACACAGAAGGTGTTGGAACCTGTTCCTATTATTGGATTTCTCACAG                         AAAAGATAATAGAGCTCATCACTGGAGCTCAGACGCGGTACACTTACATGT
genomic: AAGCACACAGAAGGTGTTGGAACCTGTTCCTATTATTGGATTTCTCACAGgtgtgcttac ... gcatgtgcagAAAAGATAATAGAGCTCATCACTGGAGCTCAGACGCGGTACACTTACATGT
EST: gi|110418220|gb|EC984349.1|EC984349
EST:     AAGCACACAGAAGGTGTTGGAACCTGTTCCTATTATTGGATTTCTCACAG                         AAAAGATAATAGAGCTCATCACTGGAGCTCAGACGCGGTACACTTACATGT
genomic: AAGCACACAGAAGGTGTTGGAACCTGTTCCTATTATTGGATTTCTCACAGgtgtgcttac ... gcatgtgcagAAAAGATAATAGAGCTCATCACTGGAGCTCAGACGCGGTACACTTACATGT
EST: gi|161709850|gb|FC059329.1|FC059329
EST:     AAGCACACAGAAGGTGTTGGAACCTGTTCCTATTATTGGATGTCTCACAG                         AAAAGATAATAGAGCTCATCACTGGAGCTCAGACGCGGTACACTTACATGT
genomic: AAGCACACAGAAGGTGTTGGAACCTGTTCCTATTATTGGATTTCTCACAGgtgtgcttac ... gcatgtgcagAAAAGATAATAGAGCTCATCACTGGAGCTCAGACGCGGTACACTTACATGT