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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATTGACTTTGTTAAGGCTCTCTGCAAGGTCTCTATAGAAGAATTGCGATCTGCATCTGATCCAAGAGTTTTTAGCCTTACAAAGATTGTTGAGATTGCgtatgaatcattctcaatttgtcttgttcatgttttagcataccatattagtgcttcatttattatttatatttgtcagctgctattaaaaattttgctaaaattctaagtgatttgttttcttttacacag

Basic information

species Vitis vinifera
transcript Vv15s0048g00800.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0048g00800.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os03g14260.2 (Oryza sativa), 5'ss of exon 7
TAATTGACTTTGTTAAGGCTCTCTGCAAGGTCTCTATAGAAGAATTGCGATCTGCATCTGATCCAAGAGTTTTTAGCCTTACAAAGATTGTTGAGATTGCgtatgaatcattctcaatttgtcttgttcatgttttagcataccatattagtgcttcatttattatttatat-ttgtcagctgctattaaaaattttgctaaaattctaagtgatttgttttcttttacacag
||||||| ||||| ||||||||||| || || || || || |||||||||||||| ||||||||| | |||||||| || ||||||||||||||||||||||| | |     ||   | | |   | |     | ||     ||||| |  |  || || ||||  |  ||| | | |||    |  |     ||    |    || ||                        
TAATTGATTTTGTAAAGGCTCTCTGTAAAGTTTCCATGGAGGAATTGCGATCTGCTTCTGATCCACGGGTTTTTAGTCTGACAAAGATTGTTGAGATTGCgtaagtacagggcttcctatattcagattgcaatgtatttccccatacttttctttgatgtatttatagtatataggcagtatatgattgtgtttccctttctcttgtag-----------------------

upper sequence: Vv15s0048g00800.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G058870_T01 (Zea mays), 5'ss of exon 7
TAATTGACTTTGTTAAGGCTCTCTGCAAGGTCTCTATAGAAGAATTGCGATCTGCATCTGATCCAAGAGTTTTTAGCCTTACAAAGATTGTTGAGATTGCgtatgaatcattctcaatttgtcttgttcatgttttagcataccatattagtgcttcatttattatttatatttgtcagctgctattaaaaattttgctaaaattctaagtgatttgttttcttttacacag
||||||| ||||| ||||||||||| ||||| || || || ||||| || || || ||||||||| |||||||||| || |||||||| || ||||| ||||| | |    ||| |   | | || |       |||  | |    | | ||| ||  |||   |||| | || |        | ||| | |   |||   | || |   |  ||||   |||| ||     
TAATTGATTTTGTGAAGGCTCTCTGTAAGGTTTCAATGGAGGAATTACGTTCGGCTTCTGATCCACGAGTTTTTAGTCTGACAAAGATAGTCGAGATAGCgtaaggaa---tctgaggctttattatca-----ttactacattgcaat-gtgttt--ttttacatttctgttcgg-------tcttatagacagtgcatgattttttttttttttgccctcttgtag----

upper sequence: Vv15s0048g00800.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA18G45340.1 (Glycine max), 5'ss of exon 7
TAATTGACTTTGTTAAGGCTCTCTGCAAGGTCTCTATAGAAGAATTGCGATCTGCATCTGATCCAAGAGTTTTTAGCCTTACAAAGATTGTTGAGATTGCgtatgaatcattctcaatttgtcttgttcatgttttagcataccatattagtgcttcatttattatttatatttgtcagctgctattaaaaat--tttgctaaaattctaagtgatttgttttcttttacacag
|||| || |||||||||||||| ||||||||||| || || |||||| | ||| ||||||||||| | ||||| ||||||||||||||||||||||||||||||| || | || |        |    |||| |     |   | | ||       |  | | | ||| | |||       | | ||     |  || | |                                 
TAATAGATTTTGTTAAGGCTCTATGCAAGGTCTCCATGGAGGAATTGAGGTCTCCATCTGATCCACGTGTTTTCAGCCTTACAAAGATTGTTGAGATTGCgtatgtattactcacctaccccttcaaacatgct-----acctctttttgccttccctctgaatttttctttttcctcatggttcttggggttcattggttgggg-----------------------------

upper sequence: Vv15s0048g00800.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA01G34560.1 (Glycine max), 5'ss of exon 8
TAATTGACTTTGTTAAGGCTCTCTGCAAGGTCTCTATAGAAGAATTGCGATCTGCATCTGATCCAAGAGTTTTTAGCCTTACAAAGATTGTTGAGATTGCgtatgaatcattctcaatttgtcttgttcatgttttagcataccatattagtgcttcatttattatttatatttgtcagctgctattaaaaattttgctaaaattctaagtgatttgttttcttttacacag
|||| || |||||||||||||| ||||||||||| || || |||||| | ||| ||||||||||| | ||||| ||||||||||||||||||||||||||||||| || | || |        |    |||| |    | |      ||    ||  |||| || ||| |  |  |  | | ||  |      || | |                                 
TAATAGATTTTGTTAAGGCTCTATGCAAGGTCTCCATGGAGGAATTGAGGTCTCCATCTGATCCACGTGTTTTCAGCCTTACAAAGATTGTTGAGATTGCgtatgtattactcacctaccacttcaaacatgctacctctttttgccttccctctgaattt-ttctttttcctcat--ggttcttgtggttcattggttgggg-----------------------------

upper sequence: Vv15s0048g00800.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA03G02610.1 (Glycine max), 5'ss of exon 7
TAATTGACTTTGTTAAGGCTCTCTGCAAGGTCTCTATAGAAGAATTGCGATCTGCATCTGATCCAAGAGTTTTTAGCCTTACAAAGATTGTTGAGATTGCgtatgaatcattctcaatttgtcttgttcatgttttagcataccatattagtgcttcatttattatttatatttgtcagctgctattaaaaat--tttgctaaaattctaagtgatttgttttcttttacacag
|||| || |||||||||||||| ||||||||||| || || |||||| | ||| ||||||||||| | ||||| |||||||||||||| |||||||||||||||| || | || |    |   |    || | |     |   | | ||       |  | | | ||| | |||       | | ||     |  || | |                                 
TAATAGATTTTGTTAAGGCTCTATGCAAGGTCTCCATGGAGGAATTGAGGTCTCCATCTGATCCACGTGTTTTCAGCCTTACAAAGATGGTTGAGATTGCgtatgtattactcacctactacttcaaacaagct-----acctctttttgccttccctctgactttttctttttcctcatggttcttggggttcattggttgggg-----------------------------

upper sequence: Vv15s0048g00800.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA09G40480.1 (Glycine max), 5'ss of exon 7
TAATTGACTTTGTTAAGGCTCTCTGCAAGGTCTCTATAGAAGAATTGCGATCTGCATCTGATCCAAGAGTTTTTAGCCTTACAAAGATTGTTGAGATTGCgtatgaatcattctcaatttgtcttgttcatgttttagcataccat--attagtgcttcatttattattta-tatttgtcagctgctattaaaaattttgctaaaattctaagtgatttgttttcttttacacag
|||| || |||||||||||| | ||||| ||||| || || ||| |  ||||| ||||||||||| | || || |||||||||||||| |||||||||||||||| || ||  |   |||  ||  | ||||      | |  | |   |  |  ||| |||| |  |  | | ||||     |  ||| | |||   |                                    
TAATAGATTTTGTTAAGGCTTTATGCAAAGTCTCCATGGAGGAACTCAGATCTCCATCTGATCCACGGGTGTTCAGCCTTACAAAGATAGTTGAGATTGCgtatgtattatctttttttttactaatgcatgccactcccttgcttccctctgaactttatttttgctcgagtctttggtgattagtataataaacaata-----------------------------------

upper sequence: Vv15s0048g00800.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT3G60860.1 (Arabidopsis thaliana), 5'ss of exon 7
TAATTGACTTTGTTAAGGCTCTCTGCAAGGTCTCTATAGAAGAATTGCGATCTGCATCTGATCCAAGAGTTTTTAGCCTTACAAAGATTGTTGAGATTGCgtatgaatcattctcaatttgtcttgttcatgttttagcataccatattagtgcttcatttattatttatatttgtcagctgctattaaaaattttgctaaaattctaagtgatttgttttcttttacacag
|||| ||||||||||| ||||||||||| || ||||| || || ||||| ||| | ||| ||||| | ||||||||||| ||||||||||||||||| ||||| |||||  ||  | |||   |  |   |||| |  ||||   |     |     |    || | | |  ||  || ||   | ||   | | ||  ||  ||||      |||||  | | | |||   
TAATAGACTTTGTTAAAGCTCTCTGCAAAGTTTCTATGGATGAGTTGCGGTCTCCTTCTAATCCACGCGTTTTTAGCCTCACAAAGATTGTTGAGATAGCgtaagaatc--tcctagtttcgttcctctctgttctctcatatactgc--atataagagacgttctctgttcttagcaactttaagtatgtagtctgacaattttctg-----tttgtcatttgtgacag--

upper sequence: Vv15s0048g00800.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT1G01960.1 (Arabidopsis thaliana), 5'ss of exon 7
TAATTGACTTTGTTAAGGCTCTCTGCAAGGTCTCTATAGAAGAATTGCGATCTGCATCTGATCCAAGAGTTTTTAGCCTTACAAAGATTGTTGAGATTGCgtatgaatcattctcaatttgtcttgttcatgttttagcataccatattagtgcttcatttattatttatatt-tgtcagctgctattaaaaattttgctaaaattctaagtgatttgttttcttttacacag
|||||||||||||||| || |||||||| || || || || || || |||||| ||||||||||| | || || ||||| ||||||||||| || || ||||| | |||| |||     | ||||    || | |     |    | || |  |    | | |||||||||   |||  | ||  ||   |                                          
TAATTGACTTTGTTAAAGCCCTCTGCAAAGTTTCCATGGATGAGTTACGATCTCCATCTGATCCACGGGTCTTCAGCCTAACAAAGATTGTGGAAATAGCgtaaggatcaatct-----tttctttacgatatct----gttttgtttttgctcactctctcttatttataccctgtttgttgtaatggcag-----------------------------------------