1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
AGGACTTCGGCAACCTAGATTGGAAGGAGAAGAGTATCTATCAGTTGTTGATGAATTAATGGAAGCTATTTTCACTCGTTGGCCCAAGGCTATTGTACAGgttcatttctttaaatctacaactattgtcatattttatctaatgcatgtcatattgttaactggatggatgggaaaatcatatcag
species | Vitis vinifera |
transcript | Vv15s0046g03670.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ATGAATTAATGGAAGCTATTTTCACTCGTTGGCCCAAGGCTATTGTACAG TTTGAGGATTTTCAAATGAAGTGGGCTTTTGAAACACTACAACGTTATCGTEST: gi|110698263|gb|EE075598.1|EE075598
genomic: ATGAATTAATGGAAGCTATTTTCACTCGTTGGCCCAAGGCTATTGTACAGgttcatttct ... atcatatcagTTTGAGGATTTTCAAATGAAGTGGGCTTTTGAAACACTACAACGTTATCGT
EST: ATGAATTAATGGAAGCTATTTTCACTCGTTGGCCCAAGGCTATTGTACAG TTTGAGGATTTTCAAATGAAGTGGGCTTTTGAAACACTACAACGTTATCGTEST: gi|161720282|gb|FC070543.1|FC070543
genomic: ATGAATTAATGGAAGCTATTTTCACTCGTTGGCCCAAGGCTATTGTACAGgttcatttct ... atcatatcagTTTGAGGATTTTCAAATGAAGTGGGCTTTTGAAACACTACAACGTTATCGT
EST: ATGAATTAATGGAAGCTATTTTCACTCGTTGGCCCAAGGCTATTGTACAG TTTGAGGATTTTCAAATGAAGTGGGCTTTTGAAACACTACAACGTTATCGT
genomic: ATGAATTAATGGAAGCTATTTTCACTCGTTGGCCCAAGGCTATTGTACAGgttcatttct ... atcatatcagTTTGAGGATTTTCAAATGAAGTGGGCTTTTGAAACACTACAACGTTATCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGACTTCGGCAACCTAGATTGGAAGGAGAAGAGTATCTATCAGTTGTTGATGAATTAATGGAAGCTATTTTCACTCGTTGGCCCAAGGCTATTGTACAGgttcatttctttaaatctacaactattgtcatattttatctaatgcatgtcatattgttaactggatggatgggaaaatcatatcag
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