1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GAAGAGTAACACCAGAAAGTGTAATATATAGCTTCGGCACTCTTTTGCTTGACCTGCTCAGTGGAAAGCATATCCCTCCCAGCCATgtaagtacttgtttcttgcctagtggcattcttatgaagcatactttatctgttctgcagtcggattgcttgagttggattggaatcaaggtgtagttag...
species | Vitis vinifera |
transcript | Vv15s0046g02900.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GCACTCTTTTGCTTGACCTGCTCAGTGGAAAGCATATCCCTCCCAGCCAT GCCCTTGATCTGATACGAGACAGGAATCTGCAGAGGCTGACAGATTCCTGCEST: gi|110419869|gb|EC986123.1|EC986123
genomic: GCACTCTTTTGCTTGACCTGCTCAGTGGAAAGCATATCCCTCCCAGCCATgtaagtactt ... tttgaatcagGCCCTTGATCTGATACGAGACAGGAATCTGCAGATGCTGACAGATTCCTGC
EST: GCACTCTTTTGCTTGACCTGCTCAGTGGAAAGCATATCCCTCCCAGCCAT GCCCTTGATCTGATACGAGACAGGAATCTGCAGATGCTGACAGATTCCTGCEST: gi|110400308|gb|EC966866.1|EC966866
genomic: GCACTCTTTTGCTTGACCTGCTCAGTGGAAAGCATATCCCTCCCAGCCATgtaagtactt ... tttgaatcagGCCCTTGATCTGATACGAGACAGGAATCTGCAGATGCTGACAGATTCCTGC
EST: GCACTCTTTTGCTTGACCTGCTCAGTGGAAAGCATATCCCTCCCAGCCAT GCCCTTGATCTGATACGAGACAGGAATCTGCAGATGCTGACAGATTCCTGC
genomic: GCACTCTTTTGCTTGACCTGCTCAGTGGAAAGCATATCCCTCCCAGCCATgtaagtactt ... tttgaatcagGCCCTTGATCTGATACGAGACAGGAATCTGCAGATGCTGACAGATTCCTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGAGTAACACCAGAAAGTGTAATATATAGCTTCGGCACTCTTTTGCTTGACCTGCTCAGTGGAAAGCATATCCCTCCCAGCCATgtaagtacttgtttcttgcctagtggcattcttatgaagcatactttatctgttctgcagtcggattgcttgagttggattggaatcaaggtgtagttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaatcaa