Sequence
atgc intronic sequence ATGC exonic sequenceGTGAACATATTCAAGGGGATTACGTTACCAGATGCTCCAAAATTTGGAAAGGTTTTTGGAGGACAGTTACTTGGACAGgtaggatttagaattttcttctttcgaattttgtaacactatgtttccaacagtacttctgctgaacatggaaacaagatattgacatagtatagtagtt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g02700.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA18G46620.1 (Glycine max), 5'ss of exon 5
GTGAACATATTCAAGGGGATTACGTTACCAGATGCTCCAAAATTTGGAAAGGTTTTTGGAGGACAGTTACTTGGACAGgtaggatttagaattttcttc-tttcgaattttgtaacactatgtttccaacagtacttct---gctgaacatggaaacaagatattgacatagtatagtagtt
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GTAGATATCTTCCGAGGAATCACTCCTCCAGATGCTCCAAAATTTGGGAAGGTATTTGGTGGACAAATAGTTGGACAGgtaaga---aaaattgccttgacttcatagtacagcatgttctcatgtcagtagcactttctaggcaatgattgcttacatgataatg-cgtaatata-cag--
upper sequence: Vv15s0046g02700.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA07G07770.2 (Glycine max), 5'ss of exon 7
GTGAACATATTCAAGGGGATTACGTTACCAGATGCTCCAAAATTTGGAAAGGTTTTTGGAGGACAGTTACTTGGACAGgtaggatttagaattttcttctttcgaattttgtaacactatgt-ttccaacagtacttctgctgaacatggaaacaagatattgacatagtatagtagtt
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----ATATCTTCCAAGGAGTTACCCTTCCAGATGCTCCAAGATTTGGAAAGGTGTTTGGGGGGCAGATGATTGGACAGgtatgatcatactgctttatcttccatattaaagcacactacccatgtcagtggcaccttttatacatatattgattac-tgaaaatttaatgt-gcag--
upper sequence: Vv15s0046g02700.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA07G07770.1 (Glycine max), 5'ss of exon 7
GTGAACATATTCAAGGGGATTACGTTACCAGATGCTCCAAAATTTGGAAAGGTTTTTGGAGGACAGTTACTTGGACAGgtaggatttagaattttcttctttcgaattttgtaacactatgt-ttccaacagtacttctgctgaacatggaaacaagatattgacatagtatagtagtt
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GTAGATATCTTCCAAGGAGTTACCCTTCCAGATGCTCCAAGATTTGGAAAGGTGTTTGGGGGGCAGATGATTGGACAGgtatgatcatactgctttatcttccatattaaagcacactacccatgtcagtggcaccttttatacatatattgattac-tgaaaatttaatgt-gcag--
upper sequence: Vv15s0046g02700.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA03G01210.1 (Glycine max), 5'ss of exon 7
GTGAACATATTCAAGGGGATTACGTTACCAGATGCTCCAAAATTTGGAAAGGTTTTTGGAGGACAGTTACTTGGACAGgtaggatttagaattttcttctttcgaattttgtaacactatgt-ttccaacagtacttctgctgaacatggaaacaagatattgacatagtatagtagtt
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GTAGATATCTTCCAAGGAATTACCCTTCCAGATGCTCCAAGATTTGGAAAGGTGTTTGGGGGGCAGATGATTGGACAGgtatgatcatactgctttatcttccatattaaagcacactacccatgtcagtggaatcttttatagatatattgattac-tgaaaatttaatgt-gcag--
upper sequence: Vv15s0046g02700.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA18G46610.1 (Glycine max), 5'ss of exon 7
GTGAACATATTCAAGGGGATTACGTTACCAGATGCTCCAAAATTTGGAAAGGTTTTTGGAGGACAGTTACTTGGACAGgtaggatttagaattttcttctt--tcgaattttgtaacact-atgtttccaacagtacttctgctgaacatggaaacaagatattgacatagtatagtagtt
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-TAGACATCTTCCGAGGAATCACTCCTACAAATGCTCCAACATTTGGGAAGGTATTTGGTGGACAAATAGTTGGACAGGtaggaaaaaactactttttcttcatagtacagtatgctactcatgtcagtagcactatcttggcaatgatttctaacgagataaagtgttaatatgcagg--
upper sequence: Vv15s0046g02700.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT1G01710.1 (Arabidopsis thaliana), 5'ss of exon 7
GTGAACATATTCAAGGGGATTACGTTACCAGATGCTCCAAAATTTGGAAAGGTTTTTGGAGGACAGTTACTTGGACAGgtaggatttagaattttcttctttcgaattttgtaacactatgtttccaacagtacttctg--ctgaa-catggaaaca-agatattgacatagtatagtagtt-----------------------------------------
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TTGAATATCTTCAGGGGGATCACACTACCTGATGCTCCTATATTTGGAAAGGTTTTTGGAGGACAATTTGTCGGACAGgta-----tcgcattttctc--taggaaggttacattattatgtctctgtaaaccttgctgatctgattcatgtgcatatatatattgcttgttaacagtgataaccgtaaccactactaagtcacttttaccaacattttacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161720865|gb|FC070980.1|FC070980EST: CAGATGCTCCAAAATTTGGAAAGGTTTTTGGAGGACAGTTACTTGGACAG GCTCTGGCTGCAGCATCGAAAACTGTTGATTGTCTTAAGGTTGTCCATAGT
genomic: CAGATGCTCCAAAATTTGGAAAGGTTTTTGGAGGACAGTTACTTGGACAGgtaggattta ... ccatatgcagGCTCTGGCTGCAGCATCGAAAACTGTTGATTGTCTTAAGGTTGTCCATAGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGAACATATTCAAGGGGATTACGTTACCAGATGCTCCAAAATTTGGAAAGGTTTTTGGAGGACAGTTACTTGGACAGgtaggatttagaattttcttctttcgaattttgtaacactatgtttccaacagtacttctgctgaacatggaaacaagatattgacatagtatagtagtt
- - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaacaa