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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTAAGGTCGAAGTGCTCAAGCAGCTTCAGAAGCAATCAGAACATCAGGGCCTGACACTACAgtaagatttttttggtgcttagcatatcagcaacagaatcatcatcttaatgcctccttaatcagactgttttttcattttcgtaatcttcctgcccatcagtgatcctaatgtgaagttaaattgaaaactaatattagcttacccaattttgtccag

Basic information

species Vitis vinifera
transcript Vv15s0046g02330.t01
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349812531|gb|FQ407150.1|FQ407150
EST:     GTGCTCAAGCAGCTTCAGAAGCAATCAGAACATCAGGGCCTGACACTACA                         TTTTGTTGAAGATAGACTTGCAACCCTCAAGAATGTCATCAAAGAGCCTGA
genomic: GTGCTCAAGCAGCTTCAGAAGCAATCAGAACATCAGGGCCTGACACTACAgtaagatttt ... ttttgtccagTTTTGTTGAAGATAGACTTGCAACCCTCAAGAATGTCATCAAAGAGCCTGA
EST: gi|32268405|gb|CD717564.1|CD717564
EST:     GTGCTCAAGCAGCTTCAGAAGCAATCAGAACATCAGGGCCTGACACTACA                         TTTTGTTGAAGATAGACTTGCAACCCTCAAGAATGTCATCAAAGAGCCTGA
genomic: GTGCTCAAGCAGCTTCAGAAGCAATCAGAACATCAGGGCCTGACACTACAgtaagatttt ... ttttgtccagTTTTGTTGAAGATAGACTTGCAACCCTCAAGAATGTCATCAAAGAGCCTGA
EST: gi|110425155|gb|EC991534.1|EC991534
EST:     GTGCTCAAGCAGCTTCAGAAGCAATCAGAACATCAGGGCCTGACACTACA                         TTTTGTTGAAGATAGACTTGCAACCCTCAAGAATGTCATCAAAGAGCCTGA
genomic: GTGCTCAAGCAGCTTCAGAAGCAATCAGAACATCAGGGCCTGACACTACAgtaagatttt ... ttttgtccagTTTTGTTGAAGATAGACTTGCAACCCTCAAGAATGTCATCAAAGAGCCTGA
EST: gi|26257481|gb|CA808544.1|CA808544
EST:     GTGCTCAAGCAGCTTCAGAAGCAATCAGAACACCAGGGCCTGACACTACA                         TTTTGTTGAAGATAGACTTGCAACCCTCAAGAATGTCATCAAAGAGCCTGA
genomic: GTGCTCAAGCAGCTTCAGAAGCAATCAGAACATCAGGGCCTGACACTACAgtaagatttt ... ttttgtccagTTTTGTTGAAGATAGACTTGCAACCCTCAAGAATGTCATCAAAGAGCCTGA
EST: gi|26258266|gb|CA809329.1|CA809329
EST:     GTGCTCAAGCAGCTTCAGAAGCAATCAGAACACCAGGGCCTGACACTACA                         TTTTGTTGAAGATAGACTTGCAACCCTCAAGAATGTCATCAAAGAGCCTGA
genomic: GTGCTCAAGCAGCTTCAGAAGCAATCAGAACATCAGGGCCTGACACTACAgtaagatttt ... ttttgtccagTTTTGTTGAAGATAGACTTGCAACCCTCAAGAATGTCATCAAAGAGCCTGA
EST: gi|30328156|gb|CD011418.1|CD011418
EST:     GTGCTCAAGCAGCTTCAGAAGCAATCAGAACATCAGGGCCTGACACTACA                         TTTTGTTGAAGATAGACTTGCAACCCTCAAGAATGTCATCAAAGAGCCTGA
genomic: GTGCTCAAGCAGCTTCAGAAGCAATCAGAACATCAGGGCCTGACACTACAgtaagatttt ... ttttgtccagTTTTGTTGAAGATAGACTTGCAACCCTCAAGAATGTCATCAAAGAGCCTGA
EST: gi|32247310|gb|CD713129.1|CD713129
EST:     GTGCTCAAGCAGCTTCAGAAGCAATCAGAACATCAGGGCCTGACACTACA                         TTTTGTTGAAGATAGACTTGCAACCCTCAAGAATGTCATCAAAGAGCCTGA
genomic: GTGCTCAAGCAGCTTCAGAAGCAATCAGAACATCAGGGCCTGACACTACAgtaagatttt ... ttttgtccagTTTTGTTGAAGATAGACTTGCAACCCTCAAGAATGTCATCAAAGAGCCTGA
EST: gi|32248082|gb|CD713901.1|CD713901
EST:     GTGCTCAAGCAGCTTCAGAAGCAATCAGAACATCAGGGCCTGACACTACA                         TTTTGTTGAAGATAGACTTGCAACCCTCAAGAATGTCATCAAAGAGCCTGA
genomic: GTGCTCAAGCAGCTTCAGAAGCAATCAGAACATCAGGGCCTGACACTACAgtaagatttt ... ttttgtccagTTTTGTTGAAGATAGACTTGCAACCCTCAAGAATGTCATCAAAGAGCCTGA
EST: gi|26265908|gb|CA816971.1|CA816971
EST:     GTGCTCAAGCAGCTTCAGAAGCAATCAGAACACCAGGGCCTGACACTACA                         TTTTGTTGAAGATAGACTTGCAACCCTCAAGAATGTCATCAAAGAGCCTGA
genomic: GTGCTCAAGCAGCTTCAGAAGCAATCAGAACATCAGGGCCTGACACTACAgtaagatttt ... ttttgtccagTTTTGTTGAAGATAGACTTGCAACCCTCAAGAATGTCATCAAAGAGCCTGA
EST: gi|26263928|gb|CA814991.1|CA814991
EST:     GTGCTCAAGCAGCTTCAGAAGCAATCAGAACACCAGGGCCTGACACTACA                         TTTTGTTGAAGATAGACTTGCAACCCTCAAGAATGTCATCAAAGAGCCTGA
genomic: GTGCTCAAGCAGCTTCAGAAGCAATCAGAACATCAGGGCCTGACACTACAgtaagatttt ... ttttgtccagTTTTGTTGAAGATAGACTTGCAACCCTCAAGAATGTCATCAAAGAGCCTGA
EST: gi|110387546|gb|EC952223.1|EC952223
EST:     GTGCTCAAGCAGCTTCAGAAGCAATCAGAACACCAGGGCCTGACACTACA                         TTTTGTTGAAGATAGACTTGCAACCCTCAAGAATGTCATCAAAGAGCCTGA
genomic: GTGCTCAAGCAGCTTCAGAAGCAATCAGAACATCAGGGCCTGACACTACAgtaagatttt ... ttttgtccagTTTTGTTGAAGATAGACTTGCAACCCTCAAGAATGTCATCAAAGAGCCTGA
EST: gi|32271023|gb|CD720182.1|CD720182
EST:     GTGCTCAAGCAGCTTCAGAAGCAATCAGAACATCAGGGCCTGACACTACA                         TTTTGTTGAAGATAGACTTGCAACCCTCAAGAATGTCATCAAAGAGCCTGA
genomic: GTGCTCAAGCAGCTTCAGAAGCAATCAGAACATCAGGGCCTGACACTACAgtaagatttt ... ttttgtccagTTTTGTTGAAGATAGACTTGCAACCCTCAAGAATGTCATCAAAGAGCCTGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCCTAAGGTCGAAGTGCTCAAGCAGCTTCAGAAGCAATCAGAACATCAGGGCCTGACACTACAgtaagatttttttggtgcttagcatatcagcaacagaatcatcatcttaatgcctccttaatcagactgttttttcattttcgtaatcttcctgcccatcagtgatcctaatgtgaagttaaattgaaaactaatattagcttacccaattttgtccag

- - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - -  AAGCAA