Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGAGAGGTCTTTGGATTTTGATACAAATCCACTCTTCGCTCTTCTGCACGAGTCTATATACTGTCAGgtaaaaaattctactttaccaaaaaccttgctagataaattttgttgcatacttttgtttatacacacacacacacatatatatatatatgcgcatatatgtgtaataattttcttggaactacctaattttttgattgctttcaacttaaag

Basic information

species Vitis vinifera
transcript Vv15s0046g02160.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0046g02160.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT3G61540.1 (Arabidopsis thaliana), 5'ss of exon 7
TATGAGAGGTCTTTGGATTTTGATACAAATCCACTCTTCGCTCTTCTGCACGAGTCTATATACTGTCAGgtaaaaaat--tctactttaccaaaaaccttgcta-----gataaattttgttgcatacttttgtttatacacacacacacacatatatatatatatgcgcatatatgtgtaataattttcttggaactacctaattttttgattgctttcaacttaaag
| |||||| |       |||||||||||||||||| |  |||||||| |||||| | ||||||||| ||||| |   |  || | |||  ||      || |||     || || |  |  | | |  | | ||||||    | |   | || | |  |                                                                      
TTTGAGAGTTGGCATTCTTTTGATACAAATCCACTATATGCTCTTCTCCACGAGGCCATATACTGTGAGgtatagtctcttcaaatttctcatctttttttctatttcagacaattacttcttcttgttatcgtttatgtttaaatggaaactttttcag---------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34364274|gb|CF405859.1|CF405859
EST:     CTGCATGAGTCTATATACTGTCAG                         GGTGCTTCCTCACACTGGTCTGCGCATAGAATCAGGGCTAAAGATGAGGGG
genomic: CTGCACGAGTCTATATACTGTCAGgtaaaaaatt ... caacttaaagGGTGCTTCCTCACGCTGGTCTGCGCATAGAATCAGGGCTAAAGATGAGGGG
EST: gi|110375135|gb|EC940096.1|EC940096
EST:     TTGATACAAATCCACTCTTCGCTCTTCTGCATGAGTCTATATACTGTCAG                         GGTGCTTCCTCACACTGGTCTGCGCATAGAATCAGGGCTAAAGATGAGGGG
genomic: TTGATACAAATCCACTCTTCGCTCTTCTGCACGAGTCTATATACTGTCAGgtaaaaaatt ... caacttaaagGGTGCTTCCTCACGCTGGTCTGCGCATAGAATCAGGGCTAAAGATGAGGGG