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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTGTCTATTGTGATGATGACACTGTATCCTATTCTAATAGCCCCACTTTTCAACAAGTTCACCCCAgtgagtattttcattctttcattctgtaaagaagaaatgcattcagtttcttgtttagtgtaacagttttcttttccatgtctctgctgcaacaagtag

Basic information

species Vitis vinifera
transcript Vv15s0046g02040.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0046g02040.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA09G39150.1 (Glycine max), 5'ss of exon 7
TTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTGTCTATTGTGATGATGACACTGTATCCTATTCTAATAGCCCCACTTTTCAACAAGTTCACCCCAgtgagtattt-tcattctttcattctgtaaagaagaaatgcattcagtttcttgtttagtgtaacagttttcttttccatgtctctgctgcaacaagtag
 |||||||||||||||||||  |||| ||||  ||| ||||||||||||||||| || |||||  | |||||||| ||||| ||||| |||||||| ||||| || |||| | |   |   ||| |  ||| || | ||  |     ||| ||  ||   ||    |  |  ||         ||| |       || | 
CTTGGCCATCTATCTTTGGGTTTTTACGTTTGGTCTTTCTATTGTGATGATGACCCTTTATCCAGTACTAATAGCTCCACTCTTCAATAAGTTCACTCCAgtaagaatttcttaacttgatattttaaaaaaaatacatataccatatttttttattttagttttgggataattacattgaattcttccaaggttagcac

upper sequence: Vv15s0046g02040.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA18G47190.1 (Glycine max), 5'ss of exon 6
TTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTGTCTATTGTGATGATGACACTGTATCCTATTCTAATAGCCCCACTTTTCAACAAGTTCACCCCAgtgagtattttcattctttcattctgtaaagaagaaatgcattcagtttcttgtttagtgtaac---agttttcttttccatgtctctgctgcaacaagtag
 |||||||||||||||||||  ||||  |||  ||| ||||||||||||||||| || |||||  | |||||||| ||||| ||||| ||||| || ||||| || ||||     | |  | | | | || || |     || |  | | ||||||| | ||      |  |  ||         ||| |       || | 
-TTGGCCATCTATCTTTGGGCTTTTACATTTGGTCTTTCTATTGTGATGATGACCCTTTATCCAGTACTAATAGCTCCACTCTTCAATAAGTTTACTCCAGtaagaatttcttaacatataatattttaaaaaaattcatataccatat-ttgtttattttagttttgggataattacattgaattcttccaaggttagcac

upper sequence: Vv15s0046g02040.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT4G01320.1 (Arabidopsis thaliana), 5'ss of exon 7
TTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTGTCTATTGTGATGATGACACTGTATCCTATTCTAATAGCCCCACTTTTCAACAAGTTCACCCCAgtgagtattttcattctt-tcattctgtaaagaagaaatgcattcagtttcttgtttagtgtaacagttttcttttccatgtctctgctgcaacaagtag
| | ||||||||||| |||| ||| |||||||| |||||| | |||||||||||  | || ||  |  | ||||| || || |||||||||||||| || ||| ||||||   |  |   |||| |  ||   |    |   ||   | | |||||       ||| | |  | | ||   | | |   || | |     
TCTTGCCATCTATCTGTGGGCATTCATGTTTATCCTGTCTCTAGTGATGATGACTATATACCCGGTCTTGATAGCACCGCTCTTCAACAAGTTCACTCCTgtgtgtatttctgtcatggccattttacaattcactgcttgtttgcatatgttgtt--accagacaatataatctcccgcttttttatggctatag----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349814570|gb|FQ399210.1|FQ399210
EST:     TGACACTGTATCCTATTCTAATAGCCCCACTTTTCAACAAGTTCACCCCA                         CTTCCTGATGGTGAGCTCAGGGAAAGAATTGAGAAACTTGCTTCGTCCCTT
genomic: TGACACTGTATCCTATTCTAATAGCCCCACTTTTCAACAAGTTCACCCCAgtgagtattt ... caacaagtagCTTCCTGATGGTGAGCTCAGGGAAAGAATTGAGAAACTTGCTTCGTCCCTT
EST: gi|30304044|gb|CB980838.1|CB980838
EST:     TGACACTGTATCCTATTCTAATAGCTCCACTTTTCAACAAGTTCACCCCA                         CTTCCTGATGGTGAGCTCAGGGAAAGAATTGAGAAACTTGCTTCCTCCCTT
genomic: TGACACTGTATCCTATTCTAATAGCCCCACTTTTCAACAAGTTCACCCCAgtgagtattt ... caacaagtagCTTCCTGATGGTGAGCTCAGGGAAAGAATTGAGAAACTTGCTTCGTCCCTT
EST: gi|351052220|gb|FQ452374.1|FQ452374
EST:     TGACACTGTATCCTATTCTAATAGCCCCACTTTTCAACAAGTTCACCCCA                         CTTCCTGATGGTGAGCTCAGGGAAAGAATTGAGAAACTTGCTTCGTCCCTT
genomic: TGACACTGTATCCTATTCTAATAGCCCCACTTTTCAACAAGTTCACCCCAgtgagtattt ... caacaagtagCTTCCTGATGGTGAGCTCAGGGAAAGAATTGAGAAACTTGCTTCGTCCCTT
EST: gi|351043081|gb|FQ451254.1|FQ451254
EST:     TGACACTGTATCCTATTCTAATAGCCCCACTTTTCAACAAGTTCACCCCA                         CTTCCTGATGGTGAGCTCAGGGAAAGAATTGAGAAACTTGCTTCGTCCCTT
genomic: TGACACTGTATCCTATTCTAATAGCCCCACTTTTCAACAAGTTCACCCCAgtgagtattt ... caacaagtagCTTCCTGATGGTGAGCTCAGGGAAAGAATTGAGAAACTTGCTTCGTCCCTT
EST: gi|110700064|gb|EE077676.1|EE077676
EST:     TGACACTGTATCCTATTCTAATAGCTCCACTTTTCAACAAGTTCACCCCA                         CTTTCCTGATGGTGA
genomic: TGACACTGTATCCTATTCTAATAGCCCCACTTTTCAACAAGTTCACCCCAgtgagtattt ... caacaagtagCTT-CCTGATGGTGA
EST: gi|351012828|gb|FQ430391.1|FQ430391
EST:     TGACACTGTATCCTATTCTAATAGCCCCACTTTTCAACAAGTTCACTCCA                         CTTCCTGATGGTGAGCTCAGGGAAAGAATTGAGAAACTTGCTTCGTCCCTT
genomic: TGACACTGTATCCTATTCTAATAGCCCCACTTTTCAACAAGTTCACCCCAgtgagtattt ... caacaagtagCTTCCTGATGGTGAGCTCAGGGAAAGAATTGAGAAACTTGCTTCGTCCCTT
EST: gi|351045038|gb|FQ449292.1|FQ449292
EST:     TGACACTGTATCCTATTCTAATAGCCCCACTTTTCAACAAGTTCACCCCA                         CTTCCTGATGGTGAGCTCAGGGAAAGAATTGAGAAACTTGCTTCGTCCCTT
genomic: TGACACTGTATCCTATTCTAATAGCCCCACTTTTCAACAAGTTCACCCCAgtgagtattt ... caacaagtagCTTCCTGATGGTGAGCTCAGGGAAAGAATTGAGAAACTTGCTTCGTCCCTT
EST: gi|30304107|gb|CB980901.1|CB980901
EST:     TGACACTGTATCCTATTCTAATAGCTCCACTTTTCAACAAGTTCACCCCA                         CTTCCTGATGGTGAGCTCAGGGAAAGAATTGAGAAACTTGCTTCCTCCCTT
genomic: TGACACTGTATCCTATTCTAATAGCCCCACTTTTCAACAAGTTCACCCCAgtgagtattt ... caacaagtagCTTCCTGATGGTGAGCTCAGGGAAAGAATTGAGAAACTTGCTTCGTCCCTT
EST: gi|351040629|gb|FQ438173.1|FQ438173
EST:     TGACACTGTATCCTATTCTAATAGCCCCACTTTTCAACAAGTTCACCCCA                         CTTCCTGATGGTGAGCTCAGGGAAAGAATTGAGAAACTTGCTTCGTCCCTT
genomic: TGACACTGTATCCTATTCTAATAGCCCCACTTTTCAACAAGTTCACCCCAgtgagtattt ... caacaagtagCTTCCTGATGGTGAGCTCAGGGAAAGAATTGAGAAACTTGCTTCGTCCCTT
EST: gi|351033796|gb|FQ447834.1|FQ447834
EST:     TGACACTGTATCCTATTCTAATAGCCCCACTTTTCAACAAGTTCACCCCA                         CTTCCTGATGGTGAGCTCAGGGAAAGAATTGAGAAACTTGCTTCGTCCCTT
genomic: TGACACTGTATCCTATTCTAATAGCCCCACTTTTCAACAAGTTCACCCCAgtgagtattt ... caacaagtagCTTCCTGATGGTGAGCTCAGGGAAAGAATTGAGAAACTTGCTTCGTCCCTT
EST: gi|349820667|gb|FQ408496.1|FQ408496
EST:     TGACACTGTATCCTATTCTAATAGCCCCACTTTTCAACAAGTTCACCCCA                         CTTCCTGATGGTGAGCTCAGGGAAAGAATTGAGAAACTTGCTTCGTCCCTT
genomic: TGACACTGTATCCTATTCTAATAGCCCCACTTTTCAACAAGTTCACCCCAgtgagtattt ... caacaagtagCTTCCTGATGGTGAGCTCAGGGAAAGAATTGAGAAACTTGCTTCGTCCCTT
EST: gi|351044625|gb|FQ443156.1|FQ443156
EST:     TGACACTGTATCCTATTCTAATAGCCCCACTTTTCAACAAGTTCACCCCA                         CTTCCTGATGGTGAGCTCAGGGAAAGAATTGAGAAACTTGCTTCGTCCCTT
genomic: TGACACTGTATCCTATTCTAATAGCCCCACTTTTCAACAAGTTCACCCCAgtgagtattt ... caacaagtagCTTCCTGATGGTGAGCTCAGGGAAAGAATTGAGAAACTTGCTTCGTCCCTT
EST: gi|351043828|gb|FQ452622.1|FQ452622
EST:     TGACACTGTATCCTATTCTAATAGCCCCACTTTTCAACAAGTTCACCCCA                         CTTCCTGATGGTGAGCTCAGGGAAAGAATTGAGAAACTTGCTTCGTCCCTT
genomic: TGACACTGTATCCTATTCTAATAGCCCCACTTTTCAACAAGTTCACCCCAgtgagtattt ... caacaagtagCTTCCTGATGGTGAGCTCAGGGAAAGAATTGAGAAACTTGCTTCGTCCCTT
EST: gi|351029807|gb|FQ427647.1|FQ427647
EST:     TGACACTGTATCCTATTCTAATAGCCCCACTTTTCAACAAGTTCACCCCA                         CTTCCTGATGGTGAGCTCAGGGAAAGAATTGAGAAACTTGCTTCGTCCCTT
genomic: TGACACTGTATCCTATTCTAATAGCCCCACTTTTCAACAAGTTCACCCCAgtgagtattt ... caacaagtagCTTCCTGATGGTGAGCTCAGGGAAAGAATTGAGAAACTTGCTTCGTCCCTT