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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGGAGTCATGGTGGAGCCTATGATTCTGTAGCAAGTTTACCAATCGAATTCTATCACTATTATCATGGTAGCAATACTGATATGGGCACCCTTATTGAGgtgattttaattagttccctttcaatttctacatttcttgcagtatatttcgttaaggttgtttctctaaacgcatctcatttcatccacattattttttcagttctgtaatcttgtgtccatcctgagttgcag

Basic information

species Vitis vinifera
transcript Vv15s0046g01740.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0046g01740.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA12G05400.1 (Glycine max), 5'ss of exon 6
ACGGAGTCATGGTGGAGCCTATGATTCTGTAGCAAGTTTACCAATCGAATTCTATCACTATTATCATGGTAGCAATACTGATATGGGCACCCTTATTGAGgtgattttaattagttccctttcaatttctacatttcttgcagtatatttcgttaaggttgtttctctaaacgcatctcatttcatccacattattttttcagttctgtaatcttgtgtccatcctgagttgcag
|| ||    ||| ||||| |||||| || | ||||  ||||| || || |||||||| |||||||| || ||||| | |||||||||||| ||||||||||| |  |  | || ||   | | || |||||||| | |||||  |         |    | || ||   ||  ||    || | ||     | |  | ||| ||  |  ||                        
ACAGATCAGTGGAGGAGCGTATGATCCTTTGGCAAACTTACCCATTGAGTTCTATCATTATTATCACGGAAGCAACAATGATATGGGCACACTTATTGAGgtaaactcgactatttatttataaaattctacatcttttgcaaaaa-------cagcacttttccttagaatacaa---atgtaattag--tcagctcttctgtgtttgaag-----------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110420271|gb|EC986537.1|EC986537
EST:     TCTATCACTATTATCATGGTAGCAATACTGATATGGGCACCCTTATTGAG                         GTTAGAAGAGCATGGGATGCATATATAAGACCCGGCGGAAG
genomic: TCTATCACTATTATCATGGTAGCAATACTGATATGGGCACCCTTATTGAGgtgattttaa ... tgagttgcagGTTAGAAGAGCATGGGATGCATATATAAGACCCGGCGGAAG