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AGAAACCAGAGGTGTCCAGGAGCATAAACTTATTTCAGATCTTCCCAAGGACCTCAGGAGAGACGTAAGGCGCCATCTCTGCTGGAATCTGCTAATGAGAgtaagttcatttctaaatctcctttatacttttgtcttagatttcagctacaatgccttatagtcctttgtttccctttag
species | Vitis vinifera |
transcript | Vv15s0046g00980.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTGGAATCTGCTAATGAGA GTGCCAATGTTCGAAAAAATGGACAGCCAACTGTTGGATGCACTGTGTGATEST: gi|110711239|gb|EE087524.1|EE087524
genomic: CTGGAATCTGCTAATGAGAgtaagttcat ... ttccctttagGTGCCAATGTTCGAAAAAATGGACAGCCAACTGTTGGATGCACTGTGTGAT
EST: ACCTCAGGAGAGACGTAAGGCGCCATCTCTGCTGGAATCTGCTAATGAGA GTGCCAATGTTCGAAAAAATGGACAGCCAACTGTTGGATGCACTGTGTGATEST: gi|30251738|gb|CB969471.1|CB969471
genomic: ACCTCAGGAGAGACGTAAGGCGCCATCTCTGCTGGAATCTGCTAATGAGAgtaagttcat ... ttccctttagGTGCCAATGTTCGAAAAAATGGACAGCCAACTGTTGGATGCACTGTGTGAT
EST: ACCTCAGGAGAGACGTAAGGCGCCATCTCTGCTGGAATCTGCTAATGAGA GTGCCAATGTTCGAAAAAATGGACAGCCAACTGTTGGATGCACTGTGTGAT
genomic: ACCTCAGGAGAGACGTAAGGCGCCATCTCTGCTGGAATCTGCTAATGAGAgtaagttcat ... ttccctttagGTGCCAATGTTCGAAAAAATGGACAGCCAACTGTTGGATGCACTGTGTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAAACCAGAGGTGTCCAGGAGCATAAACTTATTTCAGATCTTCCCAAGGACCTCAGGAGAGACGTAAGGCGCCATCTCTGCTGGAATCTGCTAATGAGAgtaagttcatttctaaatctcctttatacttttgtcttagatttcagctacaatgccttatagtcctttgtttccctttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA