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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTATTGGGCACACCAAATGAGGATACATGGCCAGGAGTGACTTCTTTGCCTGATTTTAAGTCTGCCTTTCCTAAGTGGCCTCCTAAGgtaaatgggttttgcatgtgcatctatctcatgatttttcatattgttgaaagattcatattgtgcttcctctactttgcag

Basic information

species Vitis vinifera
transcript Vv15s0045g00310.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0045g00310.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA05G25320.1 (Glycine max), 5'ss of exon 5
GGTATTGGGCACACCAAATGAGGATACATGGCCAGGAGTGACTTCTTTGCCTGATTTTAAGTCTGCCTTTCCTAAGTGGCCTCCTAAGgt----aaatgggttttgcatgtgcatctatctcatgatttttcatattgttgaaagattcatattgtgcttcctctactttgcag
  |  |||| ||||||||||| ||||||||||| |||||||| || ||||| |||||||| || |||||||| || ||||  ||||||||    |||||| ||||   | ||| |  || |  | |||  |   |   || | |  || |  || |      | ||||||||||
AATCATGGGTACACCAAATGAAGATACATGGCCTGGAGTGACATCATTGCCAGATTTTAAATCAGCCTTTCCCAAATGGCAACCTAAGgtaattaaatggattttttctttgcctg-attttgtaattactataaaaatttagaatttaaccttat----tttgtactttgcag

upper sequence: Vv15s0045g00310.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA05G25320.4 (Glycine max), 5'ss of exon 6
------------GGTATTGGGCACACCAAATGAGGATACATGGCCAGGAGTGACTTCTTTGCCTGATTTTAAGTCTGCCTTTCCTAAGTGGCCTCCTAAGgt----aaatgggttttgcatgtgcatctatctcatgatttttcatattgttgaaagattcatattgtgcttcctctactttgcag
              |  |||| ||||||||||| ||||||||||| |||||||| || ||||| |||||||| || |||||||| || ||||  ||||||||    |||||| ||||   | ||| |  || |  | |||  |   |   || | |  || |  || |      | ||||||||||
CCTTGTATGAAGAATCATGGGTACACCAAATGAAGATACATGGCCTGGAGTGACATCATTGCCAGATTTTAAATCAGCCTTTCCCAAATGGCAACCTAAGgtaattaaatggattttttctttgcctg-attttgtaattactataaaaatttagaatttaaccttat----tttgtactttgcag

upper sequence: Vv15s0045g00310.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA08G08330.1 (Glycine max), 5'ss of exon 6
GGTATTGGGCACACCAAATGAGGATACATGGCCAGGAGTGACTTCTTTGCCTGATTTTAAGTCTGCCTTTCCTAAGTGGCCTCCTAAGgtaaatgggttttgcatgtgcatctatctcatgatttttcatattgttgaaagattcatattgtgcttcctctactttgcag
  |  |||| ||||||||||| || |||||||| |||||||| || |||||||||||||| || ||||| || || ||||  |||||||||| |               ||  || |  | |||  |   |   || | |  || |  || |      | ||||||||||
AATCATGGGTACACCAAATGAAGACACATGGCCTGGAGTGACATCATTGCCTGATTTTAAATCAGCCTTCCCCAAATGGCAGCCTAAGgtaattaa-------------atggattttgtcattactataaaaatttagaatttaaccttat----tttgtactttgcag

upper sequence: Vv15s0045g00310.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA09G03470.1 (Glycine max), 5'ss of exon 6
GGTATTGGGCACACCAAATGAGGATACATGGCCAGGAGTGACTTCTTTGCCTGATTTTAAGTCTGCCTTTCCTAAGTGGCCTCCTAAGgtaa--atgg------gttttgcatgtgcatctatctcatgatttttcatattgttgaaagattcatattgtgcttcctctactttgcag
  | ||||| || |||||||| || |||||||| ||||| ||||| ||||||||||| || ||  | ||||| || |||||  | ||||||   ||||      || ||  |  || |   ||       || |||||   || | ||  || |  || |    |   ||||||||||
AATCTTGGGTACCCCAAATGAAGACACATGGCCTGGAGTAACTTCATTGCCTGATTTCAAATCAACATTTCCCAAATGGCCATCCAAGgtagttatggctgtttgtcttagacctggactaattgttgtgttcttcattcagtaggaat-ttaaccttat----ctcatactttgcag

upper sequence: Vv15s0045g00310.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: PP1S281_23V6.1 (Physcomitrella patens), 5'ss of exon 7
GGTATTGGGCACACCAAATGAGGATACATGGCCAGGAGTGACTTCTTTGCCTGATTTTAAGTCTGCCTTTCCTAAGTGGCCTCCTAAGgtaaatgggttttgcatgtgcatctatctca-tgatttttcatattg--ttgaaagattcatattgtgcttcc-------tctactttgcag------------------------------------------------------------------------------------
  || | || || |||| |||||| || ||||||||||| || ||| | || |||||||| || || ||||||||||||||| | |||||    |   |||| |     || ||||  | ||||||   || |||  ||      |    |||||  |  |       | |   |||||                                                                                     
ATTACTTGGTACTCCAACTGAGGAAACGTGGCCAGGAGTAACCTCTCTTCCAGATTTTAAATCAGCTTTTCCTAAGTGGCCTGCAAAGgtgtgagatctttgtaca---atttatcgaactgatttgcaatcttgggttctcttttcttgattgtagtcacaagggcatttgtattgcaaatagtgtggcgttgagactatgttgccagggactcttcaagctgtttttcagaacatattctaagaggggtgcgtgttttgcag

upper sequence: Vv15s0045g00310.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: PP1S25_198V6.7 (Physcomitrella patens), 5'ss of exon 7
GGTATTGGGCACACCAAATGAGGATACATGGCCAGGAGTGACTTCTTTGCCTGATTTTAAGTCTGCCTTTCCTAAGTGGCCTCCTAAGgtaaatg---ggttttgcatgtgcatctatctcatgatttttcatattgtt-gaaagattcatattgtgcttcctctactttgcag---------------------------------------------------------------------------------------------
|  | | ||||| |||||||| ||    |||||||| || ||||| ||||| ||||| ||| |||| ||||| ||||||||||| ||||||  |      |  ||      |||||| ||  |   |  | |  || |  || |||     ||  || |||       ||                                                                                                 
GACACTTGGCACTCCAAATGAAGAAGTTTGGCCAGGTGTAACTTCATTGCCAGATTTCAAGACTGCTTTTCCAAAGTGGCCTCCGAAGgtatgtataaaatactgttctatcatctagctgtttgatgctgactttctaagagagacggtcataatgtttcagaagggttaggctagggtttaagaggttagaagcgaagatcacagatatgcaaacctgtgatgcctttgatctatatttcttatgcggagcatgttgacgagcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110697700|gb|EE074917.1|EE074917
EST:     TGACTTCTTTGCCTGATTTTAAGTCTGCCTTTCCTAAGTGGCCTCCTAAG                         GATCTTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTT
genomic: TGACTTCTTTGCCTGATTTTAAGTCTGCCTTTCCTAAGTGGCCTCCTAAGgtaaatgggt ... tactttgcagGATCTTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTT
EST: gi|22013045|gb|BQ798079.1|BQ798079
EST:     TGACTTCTTTGCCTGATTTTAAGTCTGCCTTTCCTAAGTGGCCTCCTAAG                         GATCTTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTT
genomic: TGACTTCTTTGCCTGATTTTAAGTCTGCCTTTCCTAAGTGGCCTCCTAAGgtaaatgggt ... tactttgcagGATCTTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTT
EST: gi|110376567|gb|EC941627.1|EC941627
EST:     TGACTTCTTTGCCTGATTTTAAGTCTGCCTTTCCTAAGTGGCCTCCTAAG                         GATCTTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTT
genomic: TGACTTCTTTGCCTGATTTTAAGTCTGCCTTTCCTAAGTGGCCTCCTAAGgtaaatgggt ... tactttgcagGATCTTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTT
EST: gi|110360550|gb|EC923749.1|EC923749
EST:     TGACTTCTTTGCCTGATTTTAAGTCTGCCTTTCCTAAGTGGCCTCCTAAG                         GATCTTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTT
genomic: TGACTTCTTTGCCTGATTTTAAGTCTGCCTTTCCTAAGTGGCCTCCTAAGgtaaatgggt ... tactttgcagGATCTTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTT
EST: gi|71889466|gb|DT038521.1|DT038521
EST:     TGACTTCTTTGCCTGATTTTAAGTCTGCCTTTCCTAAGTGGCCTCCTAAG                         GATCTTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTT
genomic: TGACTTCTTTGCCTGATTTTAAGTCTGCCTTTCCTAAGTGGCCTCCTAAGgtaaatgggt ... tactttgcagGATCTTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTT
EST: gi|22011236|gb|BQ796270.1|BQ796270
EST:     TGACTTCTTTGCCTGATTTTAAGTCTGCCTTTCCTAAGTGGCCTCCTAAG                         GATCTTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTT
genomic: TGACTTCTTTGCCTGATTTTAAGTCTGCCTTTCCTAAGTGGCCTCCTAAGgtaaatgggt ... tactttgcagGATCTTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTT
EST: gi|110422498|gb|EC988823.1|EC988823
EST:     TGACTTCTTTGCCTGATTTTAAGTCTGCCTTTCCTAAGTGGCCTCCTAAG                         GATCTTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTT
genomic: TGACTTCTTTGCCTGATTTTAAGTCTGCCTTTCCTAAGTGGCCTCCTAAGgtaaatgggt ... tactttgcagGATCTTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTT
EST: gi|110427638|gb|EC994087.1|EC994087
EST:     TGACTTCTTTGCCTGATTTTAAGTCTGCCTTTCCTAAGTGGCCTCCTAAG                         GATCTTGCAACTGTTGTCCCAAATCTTGAATCAGCTGGCATTGATCTCCTT
genomic: TGACTTCTTTGCCTGATTTTAAGTCTGCCTTTCCTAAGTGGCCTCCTAAGgtaaatgggt ... tactttgcagGATCTTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTT
EST: gi|28967267|gb|CB346300.1|CB346300
EST:     TGACTTCTTTGCCTGATTTTAAGTCTGCCTTTCCTAAGTGGCCTCCTAAG                         GATCTTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTT
genomic: TGACTTCTTTGCCTGATTTTAAGTCTGCCTTTCCTAAGTGGCCTCCTAAGgtaaatgggt ... tactttgcagGATCTTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTT