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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAATGGTTCCTGAATTTGCCAAACTTGGTGCTTACTTCTCATTTTCTGGGTATCTTATGTCCATGAAAGAACAGAAGGCAAAGAAAATGTTAAGGACGgttagttcatcaatgccattgttatgtggtaatgttaaaatgtaaaatgtttctattttcaaatgtaaatccattatatgcacttgaattcattttgtag

Basic information

species Vitis vinifera
transcript Vv15s0024g00050.t01
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110378329|gb|EC943456.1|EC943456
EST:     GGTATCTTATGTCCATGAAAGAACAGAAGGCAAAGAAAATGTTAAGGACG                         ATACCTGTGGAAAGGATTTTATTGGAGTCAGATGCACCTGATGCTCTACCA
genomic: GGTATCTTATGTCCATGAAAGAACAGAAGGCAAAGAAAATGTTAAGGACGgttagttcat ... cattttgtagATACCTGTGGAAAGGATTTTATTGGAGTCAGATGCACCTGATGCTCTACCA
EST: gi|122691575|gb|EC980636.1|EC980636
EST:     GGTATCTTATGTCCATGAAAGAACAGAAGGCAAAGAAAATGTTAAGGACG                         ATACCTGTGGAAAGGATTTTATTGGAGTCAGATGCACCTGATGCTCTACCA
genomic: GGTATCTTATGTCCATGAAAGAACAGAAGGCAAAGAAAATGTTAAGGACGgttagttcat ... cattttgtagATACCTGTGGAAAGGATTTTATTGGAGTCAGATGCACCTGATGCTCTACCA
EST: gi|122691305|gb|EC972404.1|EC972404
EST:     GGTATCTTATGTCCATGAAAGAACAGAAGGCAAAGAAAATGTTAAGGACG                         ATACCTGTGGAAAGGATTTTATTGGAGTCAGATGCACCTGATGCTCTACCA
genomic: GGTATCTTATGTCCATGAAAGAACAGAAGGCAAAGAAAATGTTAAGGACGgttagttcat ... cattttgtagATACCTGTGGAAAGGATTTTATTGGAGTCAGATGCACCTGATGCTCTACCA
EST: gi|111125106|gb|EE253724.1|EE253724
EST:     GGCATCTTATGTCCATGAAAGAACAGAAGGCAAAGAAAATGTTAAGGACG                         ATACCTGTGGAAAGGATTTTATTGGAGTCGGATGCGCCTGATGCTCTACCA
genomic: GGTATCTTATGTCCATGAAAGAACAGAAGGCAAAGAAAATGTTAAGGACGgttagttcat ... cattttgtagATACCTGTGGAAAGGATTTTATTGGAGTCAGATGCACCTGATGCTCTACCA
EST: gi|110376873|gb|EC941950.1|EC941950
EST:     GGTATCTTATGTCCATGAAAGAACAGAAGGCAAAGAAAATGTTAAGGACG                         ATACCTGTGGAAAGGATTTTATTGGAGTCAGATGCACCTGATGCTCTACCA
genomic: GGTATCTTATGTCCATGAAAGAACAGAAGGCAAAGAAAATGTTAAGGACGgttagttcat ... cattttgtagATACCTGTGGAAAGGATTTTATTGGAGTCAGATGCACCTGATGCTCTACCA
EST: gi|110394067|gb|EC958495.1|EC958495
EST:     GGTATCTTATGTCCATGAAAGAACAGAAGGCAAAGAAAATGTTAAGGACG                         ATACCTGTGGAAAGGATTTTATTGGAGTCAGATGCACCTGATGCTCTACCA
genomic: GGTATCTTATGTCCATGAAAGAACAGAAGGCAAAGAAAATGTTAAGGACGgttagttcat ... cattttgtagATACCTGTGGAAAGGATTTTATTGGAGTCAGATGCACCTGATGCTCTACCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGAAATGGTTCCTGAATTTGCCAAACTTGGTGCTTACTTCTCATTTTCTGGGTATCTTATGTCCATGAAAGAACAGAAGGCAAAGAAAATGTTAAGGACGgttagttcatcaatgccattgttatgtggtaatgttaaaatgtaaaatgtttctattttcaaatgtaaatccattatatgcacttgaattcattttgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA