Sequence
atgc intronic sequence ATGC exonic sequenceGTGACTATATCTGGAACTCCGGTTGGACCTCTTGTCGCATTGGCTTTTAAATTGGAAGAAGGGCGCTTTGGTCAATTGACATACCTAAGgtacaatttcaattttgtttggttttatttttattttaatgtgtgtacaaggctcttatttatgcattaatggagtgttatatgttgatctaaaccatatattactgaactcgtcctaacttttatttttgttaatgaag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0021g02450.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os03g36780.1 (Oryza sativa), 5'ss of exon 7
GTGACTATATCTGGAACTCCGGTTGGACCTCTTGTCGCATTGGCTTTTAAATTGGAAGAAGGGCGCTTTGGTCAATTGACATACCTAAGgtacaatttcaattttgtttggttttatttttattttaatgtgtgtacaaggctcttatttatgcattaatggagtgttatatgttgatctaaaccatatattactgaactcgtcctaacttt-tatttttgttaatgaag
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GTCTTATTGGCTGGAACTCCTGCTGAGCCACTTGTGGCATTAGCATTTAAGCTGGAGGAAGGTCGGTTTGGTCAATTGACATATCTAAGgtatctgacaactacagactaacctt-tttgcagtatcatgcgc--------------tttactctgaagtagagtacattgctttgactt--------tatttctgaactaacctttccttcatgttgttgtcgttctag
upper sequence: Vv15s0021g02450.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA11G16460.1 (Glycine max), 5'ss of exon 7
GTGACTATATCTGGAACTCCGGTTGGACCTCTTGTCGCATTGGCTTTTAAATTGGAAGAAGGGCGCTTTGGTCAATTGACATACCTAAGgtacaatttcaattttgtttggttttatttttattttaatgtgtgtacaaggctcttatttatgcattaatggagtgttat--atgttgatctaaaccatatat-tactgaactcgtcctaacttttatttttgttaatgaag
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GTTGAGTTGCGTGGAAGTCCTGATGGGCCACTTGTGGCATTGGCTTTCAAGTTGGAGGAAGGGCGGTTTGGTCAGTTAACATATCTAAGgtacc-cctcaccataggaggctgttaatcccatttgaaaccgtttttca---tcatttatatatattgatcttttgttttgaatgttagcctacattacacaaatacataagctaa--tggtttttttttttttggctgaag
upper sequence: Vv15s0021g02450.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA01G14800.1 (Glycine max), 5'ss of exon 2
GTGACTATATCTGGAACTCCGGTTGGACCTCTTGTCGCATTGGCTTTTAAATTGGAAGAAGGGCGCTTTGGTCAATTGACATACCTAAGgtacaatttcaattttgtttggttttatttttattttaatgtgtgtacaaggctcttatttatgcattaatggagtgttatatgttgatctaaaccatatattactga-actcgtcctaacttttatttttgttaatgaag
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GTTGAGTTGCGTGGAAGTCCTGATGGGCCACTTGTGGCATTGGCTTTCAAGTTGGAGGAAGGGCGGTTTGGTCAGTTAACATATCTAAGgta-atcctcaccttaggaggctgttaatcccatttgaaaccatttttca---tcttttttatatgttgatcttctattttgaatatgt-taacctacattacacaaacacataagctaatggctgttttt-tggctgaag
upper sequence: Vv15s0021g02450.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT2G45030.1 (Arabidopsis thaliana), 5'ss of exon 7
GTGACTATATCTGGAACTCCGGTTGGACCTCTTGTCGCATTGGCTTTTAAATTGGAAGAAGGGCGCTTTGGTCAATTGACATACCTAAGgtacaatttcaattttgt--ttggttttatttttat-tttaatgtgtgtacaaggctcttatttatgcattaatggagtgttatatgttgatctaaaccatatattactgaactcgtcctaacttttatttttgttaatgaag
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GTAACCTTGACTGGATCTCCAGATGGACCTCTTGTGGCGCTGGCTTTCAAATTAGAGGAGGGTCGTTTTGGTCAATTGACATATTTGAGgtaaatgttgaatctccctcttgattatattgctgtgtttactaaatattaaaagtattt---tgtgcctttctg-----tcatatga----ctaaattggtgaatgctgaatcctaattcatgttgttggttgtta-tgaagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71863690|gb|DT012745.1|DT012745EST: TTGGCTTTTAAATTGGAAGAAGGGCGCTTTGGTCAATTGACATACCTAAG AATCTACGAGGGTGTCATTCGGAAGGGTGATTTTATAATCAATGTAAACAC
genomic: TTGGCTTTTAAATTGGAAGAAGGGCGCTTTGGTCAATTGACATACCTAAGgtacaatttc ... gttaatgaagAATCTACGAGGGTGTCATTCGGAAGGGTGATTTTATAATCAATGTAAACAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGACTATATCTGGAACTCCGGTTGGACCTCTTGTCGCATTGGCTTTTAAATTGGAAGAAGGGCGCTTTGGTCAATTGACATACCTAAGgtacaatttcaattttgtttggttttatttttattttaatgtgtgtacaaggctcttatttatgcattaatggagtgttatatgttgatctaaaccatatattactgaactcgtcctaacttttatttttgttaatgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG