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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCTTGGGTGAACTTCTATGGAAATATAGGAAAGCTCTTGCTATCTTTGgtatggaattttcattgccttacttttattttattatctattcctcttacttttaagtgctactcattgattggttgaatgttatctttttatgcggcca...

Basic information

species Vitis vinifera
transcript Vv14s0219g00120.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0219g00120.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA19G23610.1 (Glycine max), 5'ss of exon 7
ATTCTTGGGTGAACTTCTATGGAAATATAGGAAAGCTCTTGCTATCTTTGgtatggaattttcattgccttacttttattttattatctattcctcttacttttaagtgctactcattgattggttg----aatgttatc-tttttatgcggcca-------------------------------------
|||| |||||||||||||||||||| |||||||| || ||||||||  ||||||||    ||| ||  ||   | | |   ||  ||  ||| || |       || |  ||||| ||   | |||     |||   ||  ||||| | |    |                                     
ATTCATGGGTGAACTTCTATGGAAACATAGGAAAACTATTGCTATCCCTGgtatgggtcattcttttactg--tatgaaaatacaattgatttctttctgcaagaaattttactcgttacattgttattctaattcaatagtttttctactaatacaacattgttattgacggaataaacaattaattgtag

upper sequence: Vv14s0219g00120.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA16G07110.1 (Glycine max), 5'ss of exon 7
ATTCTTGGGTGAACTTCTATGGAAATATAGGAAAGCTCTTGCTATCTTTGgtatggaattttcattgccttacttttattttattatctattcctcttacttttaagtgctactcattgattggttgaatgttatctttttatgcggcca--------
|||| ||||| ||||||||||| |||||||||||  | |||||||||||||||||| |   ||  |   | |    ||||||| |   | || ||     |  ||| || | || |||  |   ||   | |    |||  |||| |           
ATTCATGGGTCAACTTCTATGGGAATATAGGAAAAGTGTTGCTATCTTTGgtatgggaagctctct---tgaggaatattttact---tctttcttacgttaataattgtttcttatttttcttttccgtata--ttttgcatgctgttgtgattcta

upper sequence: Vv14s0219g00120.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA19G23630.1 (Glycine max), 5'ss of exon 6
ATTCTTGGGTGAACTTCTATGGAAATATAGGAAAGCTCTTGCTATCTTTGgtatggaattttcattgccttacttttattttattatctattcctcttacttttaagtgctactcattgattggttgaatgttatctttttatgcggcca----
|||| ||||| ||||||||||| |||||||||||  | ||||||||| |||||||| |   || | |   |  ||| | ||     | | || |  | |   ||   |  || |  |   ||  ||  || ||   |  |  || ||       
ATTCATGGGTCAACTTCTATGGGAATATAGGAAAAGTGTTGCTATCTCTGgtatgggaaactcttggggattatttgacttc----tttcttacgttaatagttgtttcttatttttcttttccttatatttttcatgctgttgtggttctagt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110723575|gb|EE101045.1|EE101045
EST:     ATTCTTGGGTGAACTTCTATGGAAATATAGGAAAGCTCTTGCTATCTTTG                         GTATCTGTCTTCTTTGACCTCATCTTCATCTGCCAACACTACCTGCTCTAT
genomic: ATTCTTGGGTGAACTTCTATGGAAATATAGGAAAGCTCTTGCTATCTTTGgtatggaatt ... ccttttgcagGTATCTGTCTTCTTTGACCTCATCTTCATCTGCCAACACTACCTGCTCTAT
EST: gi|110699274|gb|EE076127.1|EE076127
EST:     TCT-GGGTGAACTTCTATGGNAATATAGGAAAAGCTCT-GCTATNCTT-G                         GNATCTGGCTTCTTTGAC-TCATCTTCATCTGCCCACACTAC-TGCTCTA
genomic: -CTTGGGTGAACTTCTATGGAAATATAGGAAA-GCTCTTGCTAT-CTTTGgtatggaatt ... ccttttgcagGTATCTGTCTTCTTTGACCTCATCTTCATCTGCCAACACTACCTGCTCTA
EST: gi|110696243|gb|EE075180.1|EE075180
EST:     ATTCTTGGGTGAACTTCTAAGGAAATATAAGAAAGCTCTTGCTATCCTTG                         GTAACCGTCTTCTTTGACCTCATCTTCATCTGCCAACACTACCTGCT
genomic: ATTCTTGGGTGAACTTCTATGGAAATATAGGAAAGCTCTTGCTATCTTTGgtatggaatt ... ccttttgcagGTATCTGTCTTCTTTGACCTCATCTTCATCTGCCAACACTACCTGCT
EST: gi|110724366|gb|EE100141.1|EE100141
EST:     ATTCTTGGGTGAACTTCTATGGAAATATAGGAAAGCTCTTGCTATCTTTG                         GTATCTGTCTTCTTTGACCTCATCTTCATCTGCCAACACTACCTGCTCTAT
genomic: ATTCTTGGGTGAACTTCTATGGAAATATAGGAAAGCTCTTGCTATCTTTGgtatggaatt ... ccttttgcagGTATCTGTCTTCTTTGACCTCATCTTCATCTGCCAACACTACCTGCTCTAT