Sequence
atgc intronic sequence ATGC exonic sequenceGTGTGGTCCACAGCCTAACTCAAAATTGCTTCTGAATTATGGTTTTGTTGATGAAGACAATTCCTATGATCGTATAGTGGTTGAGgtaatacttgagtcctacccttttttatacaaaattttactgtttgctcttttgggtgaactcttcctttttattgatataactttataatctctgtttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0171g00310.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os12g13460.1 (Oryza sativa), 5'ss of exon 7
GTGTGGTCCACAGCCTAACTCAAAATTGCTTCTGAATTATGGTTTTGTTGATGAAGACAATTCCTATGATCGTATAGTGGTTGAGgtaatacttgagtc-ctacccttttttatacaaaattttactgtttgctcttttgggtgaactcttcctttttattgatataactttataatctctgtttcag
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GTGTGGGCCACAGCCTAACTCTAGATTGCTCCTCAACTACGGTTTTATTGACGAAGATAATCCATATGATCGTATAGTGATTGAGgtggaatttgttttgctattgttctacattcatcttcttattggat------ttgtgtaagcaatactgaatcattgttacag--------------------
upper sequence: Vv14s0171g00310.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G047695_T01 (Zea mays), 5'ss of exon 7
GTGTGGTCCACAGCCTAACTCAAAATTGCTTCTGAATTATGGTTTTGTTGATGAAGACAATTCCTATGATCGTATAGTGGTTGAGgtaatacttgagtcctacccttttttatacaa-aattttactgtttgctcttttgggtgaactcttcctttttattgatataactttataatctctgtttcag
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GTGTGGGCCCCAAACAAACTCCAGGCTTGTTCTGAATTATGGTTTTGTTGATGAAGATAATCCCTTTGATCGTGTAGCAATTGAGgtaga----------taatcttcattatgcagcagtcttgtttactgtgcggttggtataactctg--tttgaatcactattacag-----------------
upper sequence: Vv14s0171g00310.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G302195_T03 (Zea mays), 5'ss of exon 2
GTGTGGTCCACAGCCTAACTCAAAATTGCTTCTGAATTATGGTTTTGTTGATGAAGACAATTCCTATGATCGTATAGTGGTTGAGgtaatacttgagtcctacccttttttatacaaaattttactgtttgctcttttgggtgaactcttcctttttattgatataactttataatctctgtttcag
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GTGTGGACCCCAAACAAACTCCAGGCTTGTTCTGAACTATGGTTTTGTTGATGAAAACAATCCCTTTGATCGCATATCAATTGAGgtaga----------cattctttattatgcagcaatctcctttactgtgtggttggtgtaactgtttgaatcactgttacag--------------------
upper sequence: Vv14s0171g00310.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA05G07100.1 (Glycine max), 5'ss of exon 7
GTGTGGTCCACAGCCTAACTCAAAATTGCTTCTGAATTATGGTTTTGTTGATGAAGACAATTCCTATGATCGTATAGTGGTTGAGgtaatacttgagt-cctacccttttttatacaaaattttactgtttgctcttttgggtgaactcttcctttttattgatataactttataatctctgtttcag
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GTGTGGCCCTCAACCTAACTCAAAGTTGCTTATAAACTATGGTTTTGTTGATGAAAATAATTCCAATGATCGTCTTATAGTTGAGgtacgagttggacatttactttgttttgttaagcattttgttgtttaaattc------aaatttaacctt---gatgatgcaactgtcccag-----------
upper sequence: Vv14s0171g00310.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA19G22520.1 (Glycine max), 5'ss of exon 7
GTGTGGTCCACAGCCTAACTCAAAATTGCTTCTGAATTATGGTTTTGTTGATGAAGACAATTCCTATGATCGTATAGTGGTTGAGgtaa-tacttgagtcctacccttttttatacaaaattttactgtttgctcttttgggtgaactcttcctttttattgatataactttataatctctgtttcag
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GTGTGGCCCTCAACCTAACTCAAAGTTGCTTATAAACTATGGTTTTGTTGATGAAAATAATTCCAATGATCGTCTTATAGTTGAGgtaaatgttggacatttactttgttttattcagtattttgttgtttaaattc------aaatttaacctc---gatgatacaactgtcccag-----------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|27585508|gb|CB008203.1|CB008203EST: ATTATGGTTTTGTTGATGAAGACAATTCCTATGATCGTATAGTGGTTGAG GCAGCTCTTAACACTGAGGATCCTCAATATCAGGACAAGAGAATGGTTGCT
genomic: ATTATGGTTTTGTTGATGAAGACAATTCCTATGATCGTATAGTGGTTGAGgtaatacttg ... tctgtttcagGCAGCTCTTAACACTGAGGATCCTCAATATCAGGACAAGAGAATGGTTGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGTGGTCCACAGCCTAACTCAAAATTGCTTCTGAATTATGGTTTTGTTGATGAAGACAATTCCTATGATCGTATAGTGGTTGAGgtaatacttgagtcctacccttttttatacaaaattttactgtttgctcttttgggtgaactcttcctttttattgatataactttataatctctgtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA