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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATAAAAGGAATCGTTGATGGTTGCCAACAATCTGACTGCGTTCTTCTTGGGGGAGAGgtattccaaactttggcccttactgcttttcttttatattgtcttgattctatctatattatactgcattacatataaagagaaagggaaatactgggtt...

Basic information

species Vitis vinifera
transcript Vv14s0108g00730.t01
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351026027|gb|FQ428039.1|FQ428039
EST:     GAATCGTTGATGGTTGCCAACAATCTGACTGCGTTCTTCTTGGGGGAGAG                         ACAGCAGAGATGCCAGATTTCTATGCAGATGGTGAGTATGACCTCAGTGGT
genomic: GAATCGTTGATGGTTGCCAACAATCTGACTGCGTTCTTCTTGGGGGAGAGgtattccaaa ... catttttcagACAGCAGAGATGCCAGATTTCTATGCAGATGGTGAGTATGACCTCAGTGGT
EST: gi|351015884|gb|FQ431839.1|FQ431839
EST:     GAATCGTTGATGGTTGCCAACAATCTGACTGCGTTCTTCTTGGGGGAGAG                         ACAGCAGAGATGCCAGATTTCTATGCAGATGGTGAGTATGACCTCAGTGGT
genomic: GAATCGTTGATGGTTGCCAACAATCTGACTGCGTTCTTCTTGGGGGAGAGgtattccaaa ... catttttcagACAGCAGAGATGCCAGATTTCTATGCAGATGGTGAGTATGACCTCAGTGGT
EST: gi|351017926|gb|FQ439092.1|FQ439092
EST:     GAATCGTTGATGGTTGCCAACAATCTGACTGCGTTCTTCTTGGGGGAGAG                         ACAGCAGAGATGCCAGATTTCTATGCAGATGGTGAGTATGACCTCAGTGGT
genomic: GAATCGTTGATGGTTGCCAACAATCTGACTGCGTTCTTCTTGGGGGAGAGgtattccaaa ... catttttcagACAGCAGAGATGCCAGATTTCTATGCAGATGGTGAGTATGACCTCAGTGGT
EST: gi|351047960|gb|FQ441132.1|FQ441132
EST:     GAATCGTTGATGGTTGCCAACAATCTGACTGCGTTCTTCTTGGGGGAGAG                         ACAGCAGAGATGCCAGATTTCTATGCAGATGGTGAGTATGACCTCAGTGGT
genomic: GAATCGTTGATGGTTGCCAACAATCTGACTGCGTTCTTCTTGGGGGAGAGgtattccaaa ... catttttcagACAGCAGAGATGCCAGATTTCTATGCAGATGGTGAGTATGACCTCAGTGGT
EST: gi|349824394|gb|FQ417781.1|FQ417781
EST:     GAATCGTTGATGGTTGCCAACAATCTGACTGCGTTCTTCTTGGGGGAGAG                         ACAGCAGAGATGCCAGATTTCTATGCAGATGGTGAGTATGACCTCAGTGGT
genomic: GAATCGTTGATGGTTGCCAACAATCTGACTGCGTTCTTCTTGGGGGAGAGgtattccaaa ... catttttcagACAGCAGAGATGCCAGATTTCTATGCAGATGGTGAGTATGACCTCAGTGGT
EST: gi|351044502|gb|FQ443033.1|FQ443033
EST:     GAATCGTTGATGGTTGCCAACAATCTGACTGCGTTCTTCTTGGGGGAGAG                         ACAGCAGAGATGCCAGATTTCTATGCAGATGGTGAGTATGACCTCAGTGGT
genomic: GAATCGTTGATGGTTGCCAACAATCTGACTGCGTTCTTCTTGGGGGAGAGgtattccaaa ... catttttcagACAGCAGAGATGCCAGATTTCTATGCAGATGGTGAGTATGACCTCAGTGGT
EST: gi|351020391|gb|FQ445998.1|FQ445998
EST:     GAATCGTTGATGGTTGCCAACAATCTGACTGCGTTCTTCTTGGGGGAGAG                         ACAGCAGAGATGCCAGATTTCTATGCAGATGGTGAGTATGACCTCAGTGGT
genomic: GAATCGTTGATGGTTGCCAACAATCTGACTGCGTTCTTCTTGGGGGAGAGgtattccaaa ... catttttcagACAGCAGAGATGCCAGATTTCTATGCAGATGGTGAGTATGACCTCAGTGGT
EST: gi|351045501|gb|FQ440686.1|FQ440686
EST:     GAATCGTTGATGGTTGCCAACAATCTGACTGCGTTCTTCTTGGGGGAGAG                         ACAGCAGAGATGCCAGATTTCTATGCAGATGGTGAGTATGACCTCAGTGGT
genomic: GAATCGTTGATGGTTGCCAACAATCTGACTGCGTTCTTCTTGGGGGAGAGgtattccaaa ... catttttcagACAGCAGAGATGCCAGATTTCTATGCAGATGGTGAGTATGACCTCAGTGGT
EST: gi|351021978|gb|FQ437765.1|FQ437765
EST:     GAATCGTTGATGGTTGCCAACAATCTGACTGCGTTCTTCTTGGGGGAGAG                         ACAGCAGAGATGCCAGATTTCTATGCAGATGGGGAGTATGACCTCA
genomic: GAATCGTTGATGGTTGCCAACAATCTGACTGCGTTCTTCTTGGGGGAGAGgtattccaaa ... catttttcagACAGCAGAGATGCCAGATTTCTATGCAGATGGTGAGTATGACCTCA
EST: gi|351056050|gb|FQ453511.1|FQ453511
EST:     GAATCGTTGATGGTTGCCAACAATCTGACTGCGTTCTTCTTGGGGGAGAG                         ACAGCAGAGATGCCAAATTTCTATGCAGA
genomic: GAATCGTTGATGGTTGCCAACAATCTGACTGCGTTCTTCTTGGGGGAGAGgtattccaaa ... catttttcagACAGCAGAGATGCCAGATTTCTATGCAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTATAAAAGGAATCGTTGATGGTTGCCAACAATCTGACTGCGTTCTTCTTGGGGGAGAGgtattccaaactttggcccttactgcttttcttttatattgtcttgattctatctatattatactgcattacatataaagagaaagggaaatactgggtt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agggaaa