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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGGGAAAGTGGTGAGCAGAGTATGCCATACGGCCACCAGCAAGCTCAGTCTCAGGGGTTCTTCCAGCCTTTAGAATGCAATCCCACATTGCAAATAGGgtaaacatttaacttggtgaaatccatcttctctttttaatattagtaccatagctgaattagttttcttttatgggatgaag

Basic information

species Vitis vinifera
transcript Vv14s0083g01050.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0083g01050.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA19G04320.1 (Glycine max), 5'ss of exon 7
CATGGGAAAGTGGTGAGCAGAGTATGCCATACGGCCACCAGCAAGCTCAGTCTCAGGGGTTCTTCCAGCCTTTAGAATGCAATCCCACATTGCAAATAGGgtaaacatttaacttggtgaaatccatcttctctttttaat------attagtaccatagctgaattagttttcttttatgggatgaag
||||||||  ||||||||| ||||||||||| ||   |||  | ||||| ||||| || |||||||||||||| || ||||| ||||||||||| |||||||||  |    ||||  |   ||   | | ||   | |  |      ||| | |   ||  | ||| | | | | ||  ||        
CATGGGAAGCTGGTGAGCAAAGTATGCCATATGGAACCCAAAATGCTCACTCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagccactttcttgcatttttgtgctgaatgtggtgatttaatttgaattgtattttaatgattgtcccttggtgcag-----

upper sequence: Vv14s0083g01050.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA13G06730.1 (Glycine max), 5'ss of exon 7
CATGGGAAAGTGGTGAGCAGAGTATGCCATACGGCCACCAGCAAGCTCAGTCTCAGGGGTTCTTCCAGCCTTTAGAATGCAATCCCACATTGCAAATAGGgtaaacatttaacttggtgaaatccatcttctctttttaatattagtaccatagctgaattagttttctt-ttatgggatgaag
||||||||  ||||||||| |||||| |||| ||    ||  | ||||| || || || || ||||||||||| || ||||| ||||||||||| ||||||||| | | |||     |    |  || || |   |  ||| |    |    |  |  ||||   | ||| |     | |  ||
CATGGGAAGCTGGTGAGCAAAGTATGTCATATGGTACACAAAATGCTCACTCCCAAGGCTTTTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaatc-tataagccactttcttgtattttttagctg-aatgtggtgatttgaattatattataatgcttgtcccttggtacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33402815|gb|CF208442.1|CF208442
EST:     TCTCAGGGGTTCTTCCAGCCTTTAGAATGCAATCCCACATTGCAAATAGG                         ATATAATCCTGCAGGCTCAAGCCAGCTATCTGCTCCGAGTAATGCCCAAAA
genomic: TCTCAGGGGTTCTTCCAGCCTTTAGAATGCAATCCCACATTGCAAATAGGgtaaacattt ... tgggatgaagATATAATCCTGCAGGCTCAAGCCAGCTATCTGCTCCGAGTAATGCCCAAAA
EST: gi|33405261|gb|CF210888.1|CF210888
EST:     TCTCAGGGGTTCTTCCAGCCTTTAGAATGCAATCCCACATTGCAAATAGG                         ATATAATCCTGCAGGCTCAAGCCAGCTATCTGCTCCGAGTAATGCCCAAAA
genomic: TCTCAGGGGTTCTTCCAGCCTTTAGAATGCAATCCCACATTGCAAATAGGgtaaacattt ... tgggatgaagATATAATCCTGCAGGCTCAAGCCAGCTATCTGCTCCGAGTAATGCCCAAAA
EST: gi|110383984|gb|EC948394.1|EC948394
EST:     TCTCAGGGGTTCTTCCAGCCTTTAGAATGCAATCCCACATTGCAAATAGG                         ATATAATCCTGCAGGCTCAAGCCAGCTATCTGCTCCGAGTAATGCCCAAAA
genomic: TCTCAGGGGTTCTTCCAGCCTTTAGAATGCAATCCCACATTGCAAATAGGgtaaacattt ... tgggatgaagATATAATCCTGCAGGCTCAAGCCAGCTATCTGCTCCGAGTAATGCCCAAAA
EST: gi|33402901|gb|CF208528.1|CF208528
EST:     TCTCAGGGGTTCTTCCAGCCTTTAGAATGCAATCCCACATTGCAAATAGG                         ATATAATCCTGCAGGCTCAAGCCAGCTATCTGCTCCGAGTAATGCCCAAAA
genomic: TCTCAGGGGTTCTTCCAGCCTTTAGAATGCAATCCCACATTGCAAATAGGgtaaacattt ... tgggatgaagATATAATCCTGCAGGCTCAAGCCAGCTATCTGCTCCGAGTAATGCCCAAAA
EST: gi|32458813|gb|CD799987.1|CD799987
EST:     TCTCAGGGGTTCTTCCAGCCTTTAGAATGCAATCCCACATTGCAAATAGG                         ATATAATCCTGCAGGCTCAAGCCAGCTATTTGCTCCGAGTAATGCCCAAAA
genomic: TCTCAGGGGTTCTTCCAGCCTTTAGAATGCAATCCCACATTGCAAATAGGgtaaacattt ... tgggatgaagATATAATCCTGCAGGCTCAAGCCAGCTATCTGCTCCGAGTAATGCCCAAAA
EST: gi|110370316|gb|EC929381.1|EC929381
EST:     TCTCAGGGGTTCTTCCAGCCTTTAGAATGCAATCCCACATTGCAAATAGG                         ATATAATCCTGCAGGCTCAAGCCAGCTATCTGCTCCGAGTAATGCCCAAAA
genomic: TCTCAGGGGTTCTTCCAGCCTTTAGAATGCAATCCCACATTGCAAATAGGgtaaacattt ... tgggatgaagATATAATCCTGCAGGCTCAAGCCAGCTATCTGCTCCGAGTAATGCCCAAAA
EST: gi|110379750|gb|EC944969.1|EC944969
EST:     TCTCAGGGGTTCTTCCAGCCTTTAGAATGCAATCCCACATTGCAAATAGG                         ATATAATCCTGCAGGCTCAAGCCAGCTATCTGCTCCGAGTAATGCCCAAAA
genomic: TCTCAGGGGTTCTTCCAGCCTTTAGAATGCAATCCCACATTGCAAATAGGgtaaacattt ... tgggatgaagATATAATCCTGCAGGCTCAAGCCAGCTATCTGCTCCGAGTAATGCCCAAAA
EST: gi|110710966|gb|EE087623.1|EE087623
EST:     TCTCAGGGGTTCTTCCAGCCTTTAGAATGCAATCCCACATTGCAAATAGG                         ATATAATCCTGCAGGCTCAAGCCAGCTATCTGCTCCGAGTAATGCCCAAAA
genomic: TCTCAGGGGTTCTTCCAGCCTTTAGAATGCAATCCCACATTGCAAATAGGgtaaacattt ... tgggatgaagATATAATCCTGCAGGCTCAAGCCAGCTATCTGCTCCGAGTAATGCCCAAAA
EST: gi|110398751|gb|EC965225.1|EC965225
EST:     TCTCAGGGGTTCTTCCAGCCTTTAGAATGCAATCCCACATTGCAAATAGG                         ATATAATCCTGCAGGCTCAAGCCAGCTATCTGCTCCGAGTAATGCCCAAAA
genomic: TCTCAGGGGTTCTTCCAGCCTTTAGAATGCAATCCCACATTGCAAATAGGgtaaacattt ... tgggatgaagATATAATCCTGCAGGCTCAAGCCAGCTATCTGCTCCGAGTAATGCCCAAAA