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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTTGCAGACTGTGTGACTCCATCTAATGCTTCTGAGATTGAGGATGTTGCATCCAGAACAGGATCAGACGCTCTTGCACGTCTTTGCGAAAGACTGAGgtatcgttttatgtttccttgaagcattgctattttttgcctcttctgaagtagttcttatcttcctgaagtttgttactcaattttttcttttgcttat...

Basic information

species Vitis vinifera
transcript Vv14s0083g01020.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0083g01020.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT3G02300.1 (Arabidopsis thaliana), 5'ss of exon 8
GGCTTGCAGACTGTGTGACTCCATCTAATGCTTCTGAGATTGAGGATGTTGCATCCAGAACAGGATCAGACGCTCTTGCACGTCTTTGCGAAAGACTGAGgta--tcgttttatgtttccttgaagcattgctattttttgcctc---ttctgaag--tagttcttatcttcctgaagttt-gttactcaattttttcttttgcttat---
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AATTAGCAGATAGTGTGAACCTCTCAAATGCTTCAGAGATTCAAGATGTTGCATTCAGAATGGGATCCGAAGCTTTAGCCCGCCTCTGCGAAAGACTGAGgtaagcaaagttgaagttcttggacaaacttcttcattaccccttaaactttgaaacttagaaagaatccaagtcaagtaaagctaaacaatgcgacttgatgtgtttcag