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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGTTAAAATCGTTTTCCAAGTTGGTCTGGCCCTACTGAAATATTGCCATGATGACTTAgtgagtatccctggtccttgtttcctttagatccaaataattagtactttttatgcttattaaatgaatatatttatctgatcag

Basic information

species Vitis vinifera
transcript Vv14s0083g00540.t01
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349829177|gb|FQ419687.1|FQ419687
EST:     CGTTTTCCAAGTTGGTCTGGCCCTACTGAAAATATTGCCATGATGACTTA                         ACAAAACTACCTTTCGAGAAACTCATACATGCTTTGCGTAACTTCCCTGAG
genomic: CGTTTTCCAAGTTGGTCTGGCCCTACTGAAA-TATTGCCATGATGACTTAgtgagtatcc ... atctgatcagACAAAACTACCTTTCGAGAAACTCATACATGCTTTGCGTAACTTCCCTGAG
EST: gi|351012823|gb|FQ430386.1|FQ430386
EST:     TCGTTTTCCAAGTTGGTCTGGCCCTACTGAAATATTGCCATGATGACTTA                         ACAAAACTACCTTTCGAGAAACTCATACATGCTTTGCGTAACTTCCCTGAG
genomic: TCGTTTTCCAAGTTGGTCTGGCCCTACTGAAATATTGCCATGATGACTTAgtgagtatcc ... atctgatcagACAAAACTACCTTTCGAGAAACTCATACATGCTTTGCGTAACTTCCCTGAG
EST: gi|349827061|gb|FQ421334.1|FQ421334
EST:     TCGTTTTCCAAGTTGGTCTGGCCCTACTGAAATATTGCCATGATGACTTA                         ACAAAACTACCTTTCGAGAAACTCATACATGCTTTGCGTAACTTCCCTGAG
genomic: TCGTTTTCCAAGTTGGTCTGGCCCTACTGAAATATTGCCATGATGACTTAgtgagtatcc ... atctgatcagACAAAACTACCTTTCGAGAAACTCATACATGCTTTGCGTAACTTCCCTGAG
EST: gi|349829128|gb|FQ419660.1|FQ419660
EST:     TCGTTTTCCAAGTTGGTCTGGCCCTACTGAAATATTGCCATGATGACTTA                         ACAAAACTACCTTTCGAGAAACTCATACATGCTTTGCGTAACTTCCCTGAG
genomic: TCGTTTTCCAAGTTGGTCTGGCCCTACTGAAATATTGCCATGATGACTTAgtgagtatcc ... atctgatcagACAAAACTACCTTTCGAGAAACTCATACATGCTTTGCGTAACTTCCCTGAG
EST: gi|351038918|gb|FQ457593.1|FQ457593
EST:     TCGTTTTCCAAGTTGGTCTGGCCCTACTGAAATATTGCCATGATGACTTA                         ACAAAACTACCTTTCGAGAAACTCATACATGCTTTGCGTAACTTCCCTGAG
genomic: TCGTTTTCCAAGTTGGTCTGGCCCTACTGAAATATTGCCATGATGACTTAgtgagtatcc ... atctgatcagACAAAACTACCTTTCGAGAAACTCATACATGCTTTGCGTAACTTCCCTGAG
EST: gi|110417184|gb|EC983219.1|EC983219
EST:     TCGTTTTCCAAGTTGGTCTGGCCCTACTGAAATATTGCCATGATGACTTA                         ACAAAACTACCTTTCGAGAAACTCATACATGCTTTGCGTAACTTCCCTGAG
genomic: TCGTTTTCCAAGTTGGTCTGGCCCTACTGAAATATTGCCATGATGACTTAgtgagtatcc ... atctgatcagACAAAACTACCTTTCGAGAAACTCATACATGCTTTGCGTAACTTCCCTGAG