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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCTTGTGGCAGACATTAATATTGGATATGAGGAAATTGTCAATACACAGgtcagaaaaagctttgaatacaaacttgatgattagcattgcccaattactttcataataaagtttttccctattctttcttttggcatgtgaatatag

Basic information

species Vitis vinifera
transcript Vv14s0066g01660.t01
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71882339|gb|DT031394.1|DT031394
EST:     TGCTTGTGGCAGACATTAATATTGGATATGAGGAAATTGTCAATACACAG                         GTTCTTTCTTTCAATGGTAAGCCTGTAAAGAATCTGAAGAGCCTGGCCACC
genomic: TGCTTGTGGCAGACATTAATATTGGATATGAGGAAATTGTCAATACACAGgtcagaaaaa ... gtgaatatagGTTCTTTCTTTCAATGGTAAGCCTGTAAAGAATCTGAAGAGCCTGGCCACC
EST: gi|71884182|gb|DT033237.1|DT033237
EST:     TGCTTGTGGCAGACATTAATATTGGATATGAGGAAATTGTCAATACACAG                         GTTCTTTCTTTCAATGGTAAGCCTGTAAAGAATCTGAAGAGCCTGGCCACC
genomic: TGCTTGTGGCAGACATTAATATTGGATATGAGGAAATTGTCAATACACAGgtcagaaaaa ... gtgaatatagGTTCTTTCTTTCAATGGTAAGCCTGTAAAGAATCTGAAGAGCCTGGCCACC
EST: gi|71885148|gb|DT034203.1|DT034203
EST:     TGCTTGTGGCAGACATTAATATTGGATATGAGGAAATTGTCAATACACAG                         GTTCTTTCTTTCAATGGTAAGCCTGTAAAGAATCTGAAGAGCCTGGCCACC
genomic: TGCTTGTGGCAGACATTAATATTGGATATGAGGAAATTGTCAATACACAGgtcagaaaaa ... gtgaatatagGTTCTTTCTTTCAATGGTAAGCCTGTAAAGAATCTGAAGAGCCTGGCCACC
EST: gi|71883362|gb|DT032417.1|DT032417
EST:     TGCTTGTGGCAGACATTAATATTGGATATGAGGAAATTGTCAATACACAG                         GTTCTTTCTTTCAATGGTAAGCCTGTAAAGAATCTGAAGAGCCTGGCCACC
genomic: TGCTTGTGGCAGACATTAATATTGGATATGAGGAAATTGTCAATACACAGgtcagaaaaa ... gtgaatatagGTTCTTTCTTTCAATGGTAAGCCTGTAAAGAATCTGAAGAGCCTGGCCACC
EST: gi|71884579|gb|DT033634.1|DT033634
EST:     TGCTTGTGGCAGACATTAATATTGGATATGAGGAAATTGTCAATACACAG                         GTTCTTTCTTTCAATGGTAAGCCTGTAAAGAATCTGAAGAGCCTGGCCACC
genomic: TGCTTGTGGCAGACATTAATATTGGATATGAGGAAATTGTCAATACACAGgtcagaaaaa ... gtgaatatagGTTCTTTCTTTCAATGGTAAGCCTGTAAAGAATCTGAAGAGCCTGGCCACC